Mercurial > repos > miller-lab > genome_diversity
diff prepare_population_structure.xml @ 10:9b92372de9f6
rename snp to gsSnp, sap to gdSap
author | Richard Burhans <burhans@bx.psu.edu> |
---|---|
date | Tue, 04 Sep 2012 12:49:53 -0400 |
parents | e29f4d801bb0 |
children |
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--- a/prepare_population_structure.xml Tue Jul 10 11:41:22 2012 -0400 +++ b/prepare_population_structure.xml Tue Sep 04 12:49:53 2012 -0400 @@ -18,7 +18,7 @@ </command> <inputs> - <param name="input" type="data" format="snp" label="SNP table" /> + <param name="input" type="data" format="gdSnp" label="SNP table" /> <param name="min_reads" type="integer" min="0" value="0" label="Minimum reads covering a SNP, per individual" /> <param name="min_qual" type="integer" min="0" value="0" label="Minimum quality value, per individual" /> <param name="min_spacing" type="integer" min="0" value="0" label="Minimum spacing between SNPs on the same scaffold" /> @@ -46,7 +46,7 @@ <tests> <test> - <param name="input" value="test_in/sample.snp" ftype="snp" /> + <param name="input" value="test_in/sample.gdSnp" ftype="gdSnp" /> <param name="min_reads" value="3" /> <param name="min_qual" value="30" /> <param name="min_spacing" value="0" />