Mercurial > repos > miller-lab > genome_diversity
diff README @ 31:a631c2f6d913
Update to Miller Lab devshed revision 3c4110ffacc3
author | Richard Burhans <burhans@bx.psu.edu> |
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date | Fri, 20 Sep 2013 13:25:27 -0400 |
parents | 95a05c1ef5d5 |
children | f739a296a339 |
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--- a/README Fri Jul 26 12:51:13 2013 -0400 +++ b/README Fri Sep 20 13:25:27 2013 -0400 @@ -1,18 +1,3 @@ -Source code for the executables needed by these tools can be found in -the genome_diversity directory. - -Additionally, you'll need the following python modules: - matplotlib (we used version 1.1.0) http://pypi.python.org/packages/source/m/matplotlib/ - mechanize (we used version 0.2.5) http://pypi.python.org/packages/source/m/mechanize/ - networkx (we used version 1.6) http://pypi.python.org/packages/source/n/networkx/ - fisher (we used version 0.1.4) http://pypi.python.org/packages/source/f/fisher/ - -And the following software: +The Genome Diversity tools require the following software: ADMIXTURE (we used version 1.22) http://www.genetics.ucla.edu/software/admixture/ - EIGENSOFT (we used version 3.0) http://genepath.med.harvard.edu/~reich/Software.htm - PHAST (we used version 1.2.1) http://compgen.bscb.cornell.edu/phast/ - QuickTree (we used version 1.1) http://www.sanger.ac.uk/resources/software/quicktree/ - -Images used in the tools' documentation are located in the static/images -directory. Please copy these to the static/images directory in your -Galaxy installation. + KING (we used version 1.5) http://people.virginia.edu/~wc9c/KING/