diff README @ 31:a631c2f6d913

Update to Miller Lab devshed revision 3c4110ffacc3
author Richard Burhans <burhans@bx.psu.edu>
date Fri, 20 Sep 2013 13:25:27 -0400
parents 95a05c1ef5d5
children f739a296a339
line wrap: on
line diff
--- a/README	Fri Jul 26 12:51:13 2013 -0400
+++ b/README	Fri Sep 20 13:25:27 2013 -0400
@@ -1,18 +1,3 @@
-Source code for the executables needed by these tools can be found in
-the genome_diversity directory.
-
-Additionally, you'll need the following python modules:
-    matplotlib (we used version 1.1.0) http://pypi.python.org/packages/source/m/matplotlib/
-    mechanize  (we used version 0.2.5) http://pypi.python.org/packages/source/m/mechanize/
-    networkx   (we used version 1.6)   http://pypi.python.org/packages/source/n/networkx/
-    fisher     (we used version 0.1.4) http://pypi.python.org/packages/source/f/fisher/
-
-And the following software:
+The Genome Diversity tools require the following software:
     ADMIXTURE  (we used version 1.22)  http://www.genetics.ucla.edu/software/admixture/
-    EIGENSOFT  (we used version 3.0)   http://genepath.med.harvard.edu/~reich/Software.htm
-    PHAST      (we used version 1.2.1) http://compgen.bscb.cornell.edu/phast/
-    QuickTree  (we used version 1.1)   http://www.sanger.ac.uk/resources/software/quicktree/
-
-Images used in the tools' documentation are located in the static/images
-directory.  Please copy these to the static/images directory in your
-Galaxy installation.
+    KING       (we used version 1.5)   http://people.virginia.edu/~wc9c/KING/