Mercurial > repos > miller-lab > genome_diversity

diff modify_snp_table.xml @ 7:e29f4d801bb0

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
change wsf -> snp; wpf -> sap
author Richard Burhans <burhans@bx.psu.edu>
date Wed, 18 Apr 2012 11:12:21 -0400
parents 2c498d40ecde
children 9b92372de9f6
line wrap: on
line diff
--- a/modify_snp_table.xml	Tue Apr 10 13:51:19 2012 -0400
+++ b/modify_snp_table.xml	Wed Apr 18 11:12:21 2012 -0400
@@ -15,7 +15,7 @@
   </command>
 
   <inputs>
-    <param name="input" type="data" format="wsf" label="SNP table" />
+    <param name="input" type="data" format="snp" label="SNP table" />
     <param name="p1_input" type="data" format="ind" label="Population individuals" />
     <conditional name="limit_coverage">
       <param name="choice" type="select" format="integer" label="Option">
@@ -33,19 +33,19 @@
   </inputs>
 
   <outputs>
-    <data name="output" format="wsf" metadata_source="input" />
+    <data name="output" format="snp" metadata_source="input" />
   </outputs>
 
   <tests>
     <test>
-      <param name="input" value="test_in/sample.wsf" ftype="wsf" />
+      <param name="input" value="test_in/sample.snp" ftype="snp" />
       <param name="p1_input" value="test_in/a.ind" ftype="ind" />
       <param name="choice" value="1" />
       <param name="lo_coverage" value="0" />
       <param name="hi_coverage" value="1000" />
       <param name="low_ind_cov" value="3" />
       <param name="lo_quality" value="30" />
-      <output name="output" file="test_out/modify_snp_table/modify.wsf" />
+      <output name="output" file="test_out/modify_snp_table/modify.snp" />
     </test>
   </tests>