Mercurial > repos > miller-lab > genome_diversity

diff prepare_population_structure.xml @ 7:e29f4d801bb0

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change wsf -> snp; wpf -> sap
author Richard Burhans <burhans@bx.psu.edu>
date Wed, 18 Apr 2012 11:12:21 -0400
parents 2c498d40ecde
children 9b92372de9f6
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--- a/prepare_population_structure.xml	Tue Apr 10 13:51:19 2012 -0400
+++ b/prepare_population_structure.xml	Wed Apr 18 11:12:21 2012 -0400
@@ -18,7 +18,7 @@
   </command>
 
   <inputs>
-    <param name="input" type="data" format="wsf" label="SNP table" />
+    <param name="input" type="data" format="snp" label="SNP table" />
     <param name="min_reads" type="integer" min="0" value="0" label="Minimum reads covering a SNP, per individual" />
     <param name="min_qual" type="integer" min="0" value="0" label="Minimum quality value, per individual" />
     <param name="min_spacing" type="integer" min="0" value="0" label="Minimum spacing between SNPs on the same scaffold" />
@@ -46,7 +46,7 @@
 
   <tests>
     <test>
-      <param name="input" value="test_in/sample.wsf" ftype="wsf" />
+      <param name="input" value="test_in/sample.snp" ftype="snp" />
       <param name="min_reads" value="3" />
       <param name="min_qual" value="30" />
       <param name="min_spacing" value="0" />