Mercurial > repos > miller-lab > genome_diversity
diff average_fst.py @ 18:f04f40a36cc8
Latest changes from Belinda and Cathy. Webb's updates to the Fst tools.
| author | Richard Burhans <burhans@bx.psu.edu> |
|---|---|
| date | Tue, 23 Oct 2012 12:41:52 -0400 |
| parents | 2c498d40ecde |
| children | 248b06e86022 |
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--- a/average_fst.py Fri Sep 28 11:57:18 2012 -0400 +++ b/average_fst.py Tue Oct 23 12:41:52 2012 -0400 @@ -6,12 +6,12 @@ ################################################################################ -if len(sys.argv) < 12: +if len(sys.argv) < 11: print >> sys.stderr, "Usage" sys.exit(1) -input, p1_input, p2_input, data_source, min_total_count, discard_fixed, biased, output, shuffles, p0_input = sys.argv[1:11] -individual_metadata = sys.argv[11:] +input, p1_input, p2_input, data_source, min_total_count, discard_fixed, output, shuffles, p0_input = sys.argv[1:10] +individual_metadata = sys.argv[10:] try: shuffle_count = int(shuffles) @@ -51,7 +51,6 @@ args.append(data_source) args.append(min_total_count) args.append(discard_fixed) -args.append(biased) args.append(shuffles) columns = p1.column_list()