view test-data/test_out/extract_primers/extract_primers.txt @ 26:91e835060ad2

Updates to Admixture, Aggregate Individuals, and Restore Attributes to support gd_genotype
author Richard Burhans <burhans@bx.psu.edu>
date Mon, 03 Jun 2013 12:29:29 -0400
parents 2c498d40ecde
children
line wrap: on
line source

> Contig161_chr1_4641264_4641879 115 C T 0.323016

  1 TCCGAACCGCTAAATCCTGACGACTGTTCAGTGAGAACGGGnTTCCAGCTCAGTGGAGAC
       >>>>>>>>>>>>>>>>>>>>                                     

 61 ACTCAGAGCTTATGTGATGCACCGTCGTGCCCGTGTCTGACTAAATGTGTTGCCAGAGAA
                                                            <<<<

121 CAAAACGAAAGCCCCTATT
    <<<<<<<<<<<<<<<<   

> Contig86_chr1_30984450_30985684 670 C T 0.031427

  1 TAATTCATGACGACTGCAGAAGGGCACTCAGAGGCAATTCTACTTGAGGATATTGTCTGG
       >>>>>>>>>>>>>>>>>>>>                                     

 61 TATACTCTGTCCTTGCTCAGGACATCAGTGAGAACATAGAAACATTCACnTCCCCACACC
                                                                

121 GAAAGCGTCTGTAGACCGGCCCACGGGCCGAAGTCTTTGCATTTCCTCTTGCCATGCACG
                                                                

181 AGCATTCCCAGTGGCAATCAGGGGCCAGCCCTTCTGTTTGGCCTCTGCAAGCTTGTATCC
                                            <<<<<<<<<<<<<<<<<<<<

241 TTG
       

> Contig21_chr1_60697952_60699446 307 G A 0.507396

  1 TCTGGGGCCATGTTTCTGAAGTAAGGCTGTTTCTGCAGCCTTGCGGGCTGTGTCTTGCTC
       >>>>>>>>>>>>>>>>>>>>                                     

 61 nCACCCCTTAATTCTTACCTGTAGGTGGTATTTGGTAGAGTGGAGTAAAACTGGAAACTG
                                                              <<

121 GTTCTCTGTGTTCCTGCATCT
    <<<<<<<<<<<<<<<<<<   

> Contig64_chr1_87343284_87345672 163 T A 0.038702
 VspI
  1 ATGGCCAATTCTGGTTTAcGCATCATTGTTAACAACTCTTCCATTCATTCTCAGAATTTT
       >>>>>>>>>>>>>>>>>>>>                                     

 61 CCCAATTCACATGATAAATTGTATGGTCACCTACcTACAACTAAACACTTAGTTTATTTC
                                                                

121 TATTATTATTATTATTATTATTATTATTATTAnTAtTATTATTGAAATACATTTTTTTTT
                                                                

181 CATAAACCGTTCACcCTTGTGAGAAC
       <<<<<<<<<<<<<<<<<<<<   

> Contig20_chr1_110679280_110679687 181 C T 0.659726

  1 GAGCACTCAATGAGGGGTTCGACCCTTTGCAGACACAGCATGTAGGAGGAAGAAATGCAA
       >>>>>>>>>>>>>>>>>>>>                                     

 61 cGGGGCACCCCTGCGGGGGCAGGCTTCCAGTTCAAACTGATCnGGTCTGGTCCTGGGGCC
                                                                

121 GGGCCAAAGTTGTGGTTTCcCGCACTCAAGTCTCCAC
                  <<<<<<<<<<<<<<<<<<<<   

> Contig222_chr2_9817738_9818143 220 C T 0.092668
 SpeI
  1 AGATTTAGCTGGAGCATGCCTTTGCCCTTTTTAGCCTTTCCCTTTTACCTTTATCCTTCT
       >>>>>>>>>>>>>>>>>>>>                                     

 61 TATTCTTGAAATGTTGAAATAGATGGAAGTATAGCAGCTATCTTGTCCCATAATGATGAA
                                                                

121 AACCAGGTACAAAGTTGGTGAAAACTAAAAGAGAGGAGGAGCCTGGGTTCTTGGTGGCAT
                                                                

181 CATGAACACCTGCACnAGTCTAGCATGGTCTGTGCAAAATCTCCTGATCCAAGAAAAATA
                                                                

241 TAAACATCCTTCTGTAGGGTTTTATTgCCTGAAGCAAAA
                    <<<<<<<<<<<<<<<<<<<<   

> Contig47_chr2_25470778_25471576 126 G A 0.289103
 Bsp1286I
  1 GCCAGGCGTCCCTCTTTTTGAGTTCtAATTGTGTACATCCAATCCCCATCTCAACAAATA
       >>>>>>>>>>>>>>>>>>>>                                     

 61 GCTGAACCAGCTTCCTaTTTATTTGGTAGGTnAGCACTCTAGAAATTTGCTACACTGAAC
                                                                

121 TCACCAAATTTATAATGTaAATTATGACCATTCTTTGCCATAATAATTTGGGGTAGGTCA
                                                                

181 GATTTGGTTTTGGGGGCAGAAGAAATCATCATATCACAAGCATGTGACAGCTTCCAGCCC
                                                             <<<

241 CATCTCAACTCCAAGAAATT
    <<<<<<<<<<<<<<<<<   

> Contig6_chr2_56859179_56859956 671 T C 5.308026
 MspA1I
  1 TATCCCAAAGACGTGTGTCTCAAAGCCCTGAGGTTTACAGCCAAACATGATGGACTGCCC
       >>>>>>>>>>>>>>>>>>>>                                     

 61 ATGACAAcGGATACAAATGCTAGCgTGGGTTTAATTATGCTAGAATTTTTATGATAATTA
                                                                

121 TAATGATATTGTTATGAAGTATGCTAGGCTTTnAGCGGCTAGTCTCTAAACCTATTTTCC
                                                                

181 tTATAAATCCTTTTATTTTTAGTGCACTATTTTATAGAATAAGAGGTTTTTCAGGAACAC
                                                <<<<<<<<<<<<<<<<

241 ATATATTGCATT
    <<<<<<<<<   

> Contig163_chr2_76402959_76404830 221 C T 0.178077

  1 GCCCCTTCGAGTCCATCTTaCGCgCAGCAGCAGGAGGGATGGTCCCAACCACAAACCTAC
       >>>>>>>>>>>>>>>>>>>>                                     

 61 CCGCTGCCTGAACGCTTnAAGTGCCCTCCGAAGAAAGCCCAACTCCACAGCCTGGCAACT
                                                                

121 GAGGTCCTTGTGATCTTAGCTTCCTCTGCCCCACTCCACAGCTCAGCCTCACCgGACTCC
                                                                

181 CGAGCTCCTTAAAGGAGCCCCCGAGCCCCCGCACATGCTGTTCCCTGTAACCGGGTACTC
                                                                

241 CACGGCTCGTCTGTCCTTGGAGGCTCAGCTG
            <<<<<<<<<<<<<<<<<<<<   

> Contig56_chr3_17326225_17327548 387 G C 0.224947
 AgeI,HpaII,MspI
  1 CAAAGGCAGTGATATGGGAGTGGAATGGAGAGGATGGGTGCCCCAGACTGGGTGCAGATC
       >>>>>>>>>>>>>>>>>>>>                                     

 61 TGTTCTATCTGGTGTTTGGTGGCTGACCATACnGGTGAGAAGAAGTGTcCAGGTTTCTGG
                                                                

121 CTTGATGATGCCGACAGTTATGGCAGGAAATGCTGAAGGGGTGCACATGAGCTCCTGTTC
                                                                

181 ATTCTTCACTCTTCCTCTTCTACCTCCAACCTTGCTACCTGTGTGTACCCGACTC
                                    <<<<<<<<<<<<<<<<<<<<   

> Contig108_chr3_46210055_46210874 367 A G 0.027845

  1 TTCACTCACCTGCTTCCCTGCTAACTGTCACCGCCCTCCCAATGCCTTAAACCAGCTTAG
       >>>>>>>>>>>>>>>>>>>>                                     

 61 AAACACAAAATTTAAAAAACATTATGTTGAGACAAAAATATGTATAACCTGGAATATTGA
                                                                

121 ATAACAAAATGAAAGGGAAAATGATTCAAGAACACTTGGATAAGGAAAACTACAAATATT
                                                                

181 nAAGATGTACCTTTGAACTTCCTATCACTGAAAGCAACCATGGAACCAGTACAATGTAGA
                                                                

241 CCTTCTGATCTGACTTTCTTTTGTCTCTTGCTGCTGGGAAGTAGAATGCCCC
                                 <<<<<<<<<<<<<<<<<<<<   

> Contig1_chr3_51588422_51589409 926 A G 1.147200

  1 AGATTATGGCCTGTGTTTACcCCAGCCTcGCAGAACATTTTACTGGGGACACCTGCCAGG
       >>>>>>>>>>>>>>>>>>>>                                     

 61 TGGCAGATCAGAAGCCCGTGAGGCAGCCAGCCAATGGGAtGGCCAAAACCTAGGGCTTCG
                                                                

121 TAnGGGAGGGAGATGTTTTCCTCgTCCCTCT
            <<<<<<<<<<<<<<<<<<<<   

> Contig65_chr3_80727952_80728283 39 T C 7.077725

  1 CAAAGGCTTACTTTTTaGATCAACACTCTAAATTCTTAAnAAACAACAAAGCCAAATTTT
    >>>>>>>>>>>>>>>>>>>>>>>>>>                                  

 61 CCTATATCATTGAGTAGTTGATACGTCTTTGGTTTTGCGCTAGCAGT
                            <<<<<<<<<<<<<<<<<<<<   

> Contig134_chr4_12145648_12148225 1326 C T 0.079565
 BalI
  1 AACCCAGAtCAGAAACGTCCCATGGCTAGTCATCTTCCTACACAGACTTCTgAGAGCCAA
       >>>>>>>>>>>>>>>>>>>>                                     

 61 GCATCGTCAAcCGGCCAtTCTnGGCCATTCTCCCGAGCAGATGCTGCCGGGATAATCTGC
                                                                

121 AGCATGAAGCCCTCCCTCGGGGGAGACCCGACcgGGTCCACACAGGTCTGTcTAGC
                                     <<<<<<<<<<<<<<<<<<<<   

> Contig19_chr4_26233601_26233991 146 G C 0.163005
 DpnI,MboI,Sau3AI
  1 AATTTGGCTTCCTCTGGAGTtGTCCCTTAATGCTAGGTATCAAGTGCTGACAGGCCACAG
       >>>>>>>>>>>>>>>>>>>>                                     

 61 ATnAGGGTAACACATGATTACAGGGCAACACACTGTAACACGTATTCCCTTGCCTTGTCT
                                          <<<<<<<<<<<<<<<<<<<<  

121 T
     

> Contig17_chr4_61310346_61311158 267 C T 0.097708

  1 TATTCCAGACCAACCAAAAGGTCTAAGGAATAATAGAAGCTTCACCCACAGACCTGCCAC
       >>>>>>>>>>>>>>>>>>>>                                     

 61 CCAACTTGAGAAACAGCACTTGCTTCCTCATAGAGTCGAAACGTCTTCGGTGGGTCCCCT
                                                                

121 CCTGAAGCATCACCGCTACCTTTCCTCTTGGGAGTCACTGCCACCCnGAACTTGTTGCTG
                                                                

181 CTTATTCTCTTTTATTTTTCTTGTTTTTGAAAGAACCCTGTCTTGGGTGTTAGGATAC
                                       <<<<<<<<<<<<<<<<<<<<   

> Contig31_chr5_4734956_4736547 1166 C T 0.020932

  1 TGTTCTGCCATGCACACTTCTTCAACCCTTCAACCTGTGGGAGTCACCTCACATTCCCAC
       >>>>>>>>>>>>>>>>>>>>                                     

 61 AGcGAATGGAATATCTATCTATCTgnCTTTAGGGATTTGTTACGTTTTCTTTTTCTTCCT
                                                                

121 TTTCCTTCCAATATCTTAATGGGCAATTTTGTGGACAGTTGATAGAGACAACGTCAGGAG
                                                         <<<<<<<

181 CTGTTGGCCTAGTAAA
    <<<<<<<<<<<<<   

> Contig6_chr5_26899813_26900498 97 A C 7.369943
 AvaII,Sau96I,SinI
  1 AACTGAAAGTGAGAATTCTTTGTATTTGCTAGTCAAAAGGATTTCTAAGTCAAAAAAGTA
       >>>>>>>>>>>>>>>>>>>>>>>>>>                               

 61 ATTTGGGAnCATTAAGTCATATTTATAGACTAAAATTTCATTCCTAAAGACAATTTAGTA
                                                                

121 AAAATGCTAGGCTTTCTAGAAATTTAACCTAACATAAAAAATTACAGTAAGTTTGCTAAA
                                                                

181 GAATCACAGAGTTGACTGACAGTTTCCCAGGTTA
               <<<<<<<<<<<<<<<<<<<<   

> Contig45_chr5_50892738_50892968 169 C A 0.496871

  1 TGAAAGGGGCACTGGGAATTATCAGAACCTTCTGGGTAATTAAACTGGGGAAAGCATAAT
       >>>>>>>>>>>>>>>>>>>>                                     

 61 ACCATTTAGAAAAAGTTCAAGTGAGTCTTTTCCTTATTCTCCCnTGTACCCAGAAAAACC
                                                     <<<<<<<<<<<

121 TGGACATGGTAC
    <<<<<<<<<   

> Contig45_chr5_76133561_76134403 388 A G 0.038045

  1 CATGAGCATGCTGTCTGCACAAtGGGAGCACCCGTGATGTGAGAGTAGCCAGGCCACCCT
       >>>>>>>>>>>>>>>>>>>>                                     

 61 GGCTTGAGTGCTTTGTCCAAAAGGCACAATGGGAACTACACAGAAACAATCAGATTCACT
                                                                

121 GCCTTCGAGGGTTTGAAGAAGACAGCTGAAGAGTAGGAGGTAGAAnCAAAAAGGCATGAG
                                                                

181 AGGGGGAAGCAGAGGCTGCAAGACATGAGCTGGGCAGTACTGACgGGCCACACAGAGCAC
                                                               <

241 TGGAGACAAGGTCAGGAGCCCT
    <<<<<<<<<<<<<<<<<<<   

> Contig111_chr6_5821219_5822519 1060 A G 0.230765
 AvaI
  1 CGTCAGAGCTGTCTTCCCTCCAGCCAGAGGGGCCCTGAGAAGGAAGGGGGCTGAACCCAG
       >>>>>>>>>>>>>>>>>>>>                                     

 61 GCgCCAGCCCAAGCTGCAGCGTGATCTGGGGGTGAGGCCCCCCGCTGCACAGGGGGCACG
                                                                

121 GGGGTTCGGGCAGAGATCGGCTACCCATGGCCGGCGAGGCCACAgTGGCAATGGGCAGCC
                                                                

181 AGCCTCCGACCAGCcGCCCCCnAGCTGCCTATTTAAGTCAGGAGCTTCTCCTTCCCgTGG
                                                         <<<<<<<

241 AAGTAGAGGACAAATT
    <<<<<<<<<<<<<   

> Contig102_chr6_30271329_30271577 39 T G 1.158547

  1 TCTTCCTTTATGCATCAGGGCAGCACCCTGGGGAGAAGnGGGGGGGACAcGTGTGTCCTG
       >>>>>>>>>>>>>>>>>>>>                                     

 61 GGGAAAGGGGTGTTCCCACTCCCTGCAATGCCTTCCCCCGCCCAGACCAGCAGTTCTCAG
                                                                

121 TCTTGACTGCATGGACTCTCCTGGAAGGCTTTAAAAAATGTGGAGGCCGAGGCTTACCCA
                                                                

181 tGACGGTTCTGACTGAATTGCTCTGGAGTAGGGCTTAGGCACTG
                         <<<<<<<<<<<<<<<<<<<<   

> Contig112_chr6_51024554_51024851 100 A G 4.286925

  1 CTTCATCATACCTATCATTGCCTATCGTTATACTATAGAGGTATTGTTCATTCTTTTTTA
       >>>>>>>>>>>>>>>>>>>>>>>>                                 

 61 TAGACTCATTGAGTAAAACTCAGGnCATGAGGGAAGGAACTTTGTCTCTTGTGCAATTCC
                                                                

121 CTATCCTCAGTCCTTAAATATATGTATGCTAcCCAATAGGCACCAAATAT
                               <<<<<<<<<<<<<<<<<<<<   

> Contig84_chr7_6648683_6650255 1297 G A 0.165637

  1 GTTAGTTGTGAACACTCCCCAGGTAAACTGGTGTAACTCTTGGGGCAAAGCATGGAGTCT
       >>>>>>>>>>>>>>>>>>>>                                     

 61 ACCCAAAAATGTAGAATTCTGCAGAGACAGCTGTTTCTTGGTTGGGTTTCTAGACCAGAA
                                                                

121 AATAGAAGATTATAATTATGGGTGGGAAATATATGTGCAAAAAAGTATAAAAGAAGAGGA
                                                                

181 ACAGAATAAAnGGAAATGGAAATGTTTGTAATTGATAGGGATGTGGATGTAAATGCCTGG
                                                    <<<<<<<<<<<<

241 CAGAGAGGAGG
    <<<<<<<<   

> Contig206_chr7_26281823_26282074 103 C A 0.947486
 NheI
  1 ATCCACATTCGCACAGCTCCTAATATAATATTTCATTGTTAAAATACTTCTGATTGGCCT
       >>>>>>>>>>>>>>>>>>>>                                     

 61 AGGACATATTTTTACAACTGCCTTGACTTCAATTGCTAGnAGTAGCTTGCCAAAGAgGTG
                                                                

121 CTTTAATAAAGGAAATTAACTTCTTTTAATATGTTGACTGATATACCAAGGTTTTAGTGC
                                                                

181 TATTAGTTTACCTTCCCCAAAAGTGCTTA
          <<<<<<<<<<<<<<<<<<<<   

> Contig38_chr7_50681997_50682600 42 T C 0.145997

  1 TAGAGCTCTCAGCATCCAAGCAGAATCTACTGGGTCTGACTGnGTTCTGCTCTGTCACTG
     >>>>>>>>>>>>>>>>>>>>                                       

 61 GAATGACATTTCATTGCAGAGTACTCCTGCAGTACAACCAGGGCACAGCCTTTAAATTGA
                                                                

121 CCATGTCCCCTGGTCTaCTCTGCTGAGCTaTGCACGGGTCCCTTCTGGTTCAAACACAGA
                                                                

181 CTGATACAGCTCAGATGGAAGGGAGGCAGTTGCAGAGAAACAAA
                         <<<<<<<<<<<<<<<<<<<<   

> Contig91_chr8_12804505_12805470 409 C A 0.175272

  1 CTGTTTTCAGGGGCTACCTGCTATCTCCAGAACATGCCTGGCTCTCCTCCAAACACTGTT
       >>>>>>>>>>>>>>>>>>>>                                     

 61 CAAnCTGACCAAAGCAGAGAGCTGTATATGGACCACACATACCAAAAAAAAAAAAAAGAC
                                                                

121 AGTCCACACCCTCTGTATAATTATATGGTACAAATAATAGAGTTTTTGTTAACTACCAGC
                                                                

181 TCTTTTTACAAAGCCTATCAAgTATCATAGACAGTATAATGCTGTGATTGCATCTGTGAA
                                           <<<<<<<<<<<<<<<<<<<< 

241 CC
      

> Contig8_chr8_27811135_27812620 333 C T 0.272485

  1 CTTCAAGGAAAGGAGGCAGTTTGGACAAGTCAAAAAAATCCCAAAACtTTGTACTATATA
       >>>>>>>>>>>>>>>>>>>>                                     

 61 AATCTGGCATATTTGTTGATGACanAATTGAGTTAGAAGCAAGAGTCAGAAGCTGACTTT
                                                                

121 CATGCTGTTTTTCTGTTGTTTTCTGCGGCTCCCCTATGTACTAGTTCTCTTCCgGTGTGC
                                                                

181 TGACAACTTCCAACTTcTCATAcCCTCTGCATTTCACGTTCTGC
                         <<<<<<<<<<<<<<<<<<<<   

> Contig17_chr8_57490059_57490498 69 G T 0.522227
 BglII,DpnI,MboI,Sau3AI,XhoII
  1 CACCAGAAAACAGGCATGGAACAGATTCTTTCAnATCTTTAAGAACAAACCAGTCCTGCT
       >>>>>>>>>>>>>>>>>>>>                                     

 61 GACACATAGATTTTTGGACTTTTGGCCTCTGTAACTGTGAGAATAAATTTCTATTTTAAG
                                                                

121 CCATCTACTTTGTAGTAATTTGTTATGGCAGCCCTGAGAAATTA
                         <<<<<<<<<<<<<<<<<<<<   

> Contig73_chr9_29451535_29452248 616 A G 0.448230
 Eco47III,HaeII
  1 ACCCAAGAGTCTGAGAGGCCCAGAGGCAGCTGGAGGCTGGAGGAGTCCCaCAGGCAAACC
       >>>>>>>>>>>>>>>>>>>>                                     

 61 CTCCATTCCATGCGCCCCAGGGAGGCCAGGAAATCAGCnCTCCCAGGAGCAGGGAAGCAG
                                                                

121 CAGTCCCTGGCATTGCCAGGGCAAGTGGCCACTCAGGGGAGAAAGGGGTGAGCTGGGGAG
                                                                

181 GGGGAAGAGGGGAGGGGAGGGAAGGCAGAGACGAAGAGAA
                       <<<<<<<<<<<<<<<<<<<< 

> Contig96_chr9_39008495_39009278 215 A C 0.426539
 SspI
  1 TGGCAAACTCCTTGTGAATGCCACTACACTTTCTGGTCTCTGTATGTAATGCTAGATATT
       >>>>>>>>>>>>>>>>>>>>                                     

 61 ACTGACACTTACcGCTACAAAGGCAAGACAAGCAAGACAACTGACATACACCCAgGTATG
                                                                

121 GATCTATGAAGGGAGCTCCTTCTGCTAGAAAACAATATGTAAnTATTTACaTAACACCTA
                                                                

181 CAATTCTAAATGGGTAGTTTCCCACATGTGAGATTACATCTTCAAGAGCCAAAGGACAAT
                                                  <<<<<<<<<<<<<<

241 TTGTGCATC
    <<<<<<   

> Contig22_chr10_15505382_15505589 172 T C 2.860867

  1 CGCAGGCGCCCCAATTATTCTTAACTCCTTATCAAAAGTTTTCCTAATTGAAACTTAAGC
       >>>>>>>>>>>>>>>>>>>>                                     

 61 ATCACCTGTTTATTTCCTCTAAAATAAATGTATACATATAGAATTTCAGTAAGATAATGT
                                                                

121 CTCAAAGAAGATGATAGCCATGGGAGAGGCTTATATGTACTTCnTATAATAAACAACGTC
                                                      <<<<<<<<<<

181 CAGGTGTGATATT
    <<<<<<<<<<   

> Contig69_chr10_40547265_40548153 371 G A 0.137642
 Bsp1286I,CfoI,HaeII,HhaI
  1 AAGGGGAAGAACTGAAGCGAGTGAGAAGCACGGAAGGACTTTTAGGTTTACAGCTGGGGT
       >>>>>>>>>>>>>>>>>>>>                                     

 61 CACTGGTCTTCGCTATGGATGCCTCTCTTAAAGGAAAGACTAATTCTCTGTGGGTACTGA
                                                                

121 AGGTGgGAGATGAATGTAGATGGGCnCTCGCATGTGTCAATGCTGACGGCTTGGTGAGAG
                                                                

181 GTTTGGTGCGAGGCCAAAAAGGCgGGGATgAGAGAAGGATGACCTAGGGAGACTGCAGGG
                                                                

241 TATTTAAAAGTTTGGGTCCAATTTTTCTCAAAGTGTGGCCAGTGCAC
                            <<<<<<<<<<<<<<<<<<<<   

> Contig9_chr10_51475063_51476054 770 C T 0.393903

  1 GTCTTCCTTCTAATCCCCaAGCcGTGAGAAGCTGTCTGAGCGCTCCTTGCTGGGCGTCCC
       >>>>>>>>>>>>>>>>>>>>                                     

 61 TGCATGCCTGTACTGGGGCACACCTACGCCCTGGGTCCTGCTnCTGAAACGGTGTCTCAT
                                                                

121 TTCTGTAATCGCTCCAAGCTTAATGGCTCTCAGCCTTGTGGGTTGCAGTGGAGAGAAAGC
                                            <<<<<<<<<<<<<<<<<<<<

181 ATT
       

> Contig72_chr11_7142765_7143772 146 G A 1.137400

  1 GGTGTAGTGAGGCTTCCACGAGCAGCCAGGCTTACAAACTCATCCTTAGCCTAAAAACTC
       >>>>>>>>>>>>>>>>>>>>                                     

 61 CACnAAGTCAAGTATCTTGTGGGTGTTGAAAACTGTTCCACTCTGCAGAGCACCTCTATA
                                                                

121 TGAAGTAATAATCATGGTATAATGTCCTTCTTCACATACCTGCCAAGAT
                             <<<<<<<<<<<<<<<<<<<<<   

> Contig7_chr11_40017076_40017630 352 C T 0.336170

  1 TCGGTCCTTCCTTGATCACATCTCCATGATCCTCCCACTGTTACTTGGAGGAGAATTGTT
     >>>>>>>>>>>>>>>>>>>>                                       

 61 GCTTCCACAAATCAGATCTCTTTATTTTTCATTTATTCAACAAATGTGGACTGAGCTCTT
                                                                

121 TGtATAGTACATTCTGTGGGCACTATTCACTAGACACACTGTAAACACTTCTGCTTCCTG
                                                                

181 ACTTTGTTCAGATCTACCCCCnTGCCTGATCTGCCCTCCCCACCTGGTTTTCATCTCAGG
                                                                

241 CTTAGGTCAAGCCTCATtTGCACTTC
       <<<<<<<<<<<<<<<<<<<<   

> Contig16_chr11_53408448_53408790 187 A G 1.366749

  1 ATATTGCCAGTTTTAATGGGTGATATTTAGTCCTCCAATTAGACCTCTTTAGTGCATTGG
       >>>>>>>>>>>>>>>>>>>>                                     

 61 ATACCAGTGAGCAATCATTCTGACAnAATTTCTGCTGCCTTGATTTTTGTGACAA
                                    <<<<<<<<<<<<<<<<<<<<   

> Contig21_chr12_18403415_18404381 586 G T 0.068025

  1 AGTTCCAATGTCAGAGTCCCTCCCTCTACCTCCTATCCAACCcGCTACTTTTTTTnTTTT
       >>>>>>>>>>>>>>>>>>>>                                     

 61 GTTTTACAACAAAAATAAACCTTCTTGTAACAATTCCAACAATTACAAAATAGAGTAAAA
                                                                

121 TGTTTAAGTCTCTACCTAAACACACTCATCCTCAGAGAAACTCACAGGTAATTTCGGTtC
                                                                

181 GTATCTTCCCAGACCCTCTTCTCAGcTTTCACACATACTACATACACATGAACTTCGAGC
                                                 <<<<<<<<<<<<<<<

241 TGGCTGTT
    <<<<<   

> Contig41_chr12_25565452_25566993 475 G T 2.230501

  1 TTACATAGCcAAGTGGGAAACAAAGcTACATTTTTnAATATTAATAAATCTGTTTTTTTA
       >>>>>>>>>>>>>>>>>>>>>                                    

 61 AAGGGTTaTTATACAATATTATCAAACTTCTTGTGAATGTCAGAATCCAGAACAAACCTA
                                                                

121 AAATCAGTAATACTTGGGAAAGACGCAAATAGTCCCTCTTTCCACT
                           <<<<<<<<<<<<<<<<<<<<   

> Contig5_chr12_53880670_53882675 1221 A C 0.061001

  1 AAGCCATCCATGTGTGTGCTTTCATAATATATTATGACAGGAGATTAAATTCTAAGTAAA
       >>>>>>>>>>>>>>>>>>>>                                     

 61 GATTAGTCCCCAGTACAGTAGTGTAAAATAGGACTTTTCTCCCTTTTTCTCTCCnCGATA
                                                                

121 TTCCAAATCAGAGTTTGGCCAAAAAgAAGTCAATAAGGACTTAcAAAAAAAAAATCTCCA
                                                                

181 TTCACTGAAAGTAGCTTGCTAGCATTTTCCTTTCTcCTGATGTTGCTCCATAACTTCAAC
                                                                

241 CCTTTTTAAAACTGTCTACTGTGGGGTAGACAGAAGGCGTGGTCGTGAGGTAAAGGTCAA
                                         <<<<<<<<<<<<<<<<<<<<   

> Contig107_chr13_26045881_26046290 341 C G 4.509990

  1 CATAGATTGCCTTTTCCAGTCcAGAAGTTTAGAACAGACTGCCCTGAGATCATGGTGGGA
       >>>>>>>>>>>>>>>>>>>>                                     

 61 AATATAATACTCATTAGGTTgTTGAAATTCTTGTAGGAATGGAAGAATTTCAGCTTAGGC
                                                                

121 ATTCTGCTnCTGTATTCCCAGATTACAGTGGGAACTGTATGAAA
                     <<<<<<<<<<<<<<<<<<<<<<<<   

> Contig251_chr13_28498333_28501066 864 T G 0.067573

  1 GCCCTCTGGCTTCTGTTTGGGAGGTAGGGCGGGTGGGCAGGAAGGGAGGACGGTCGGGGT
       >>>>>>>>>>>>>>>>>>>>                                     

 61 ATTGGTTCnCCTCCTCCtGCTGGGTCCCAGATGGATACAGGCCAGGTCTG
                               <<<<<<<<<<<<<<<<<<<<   

> Contig55_chr13_53467708_53468101 221 T G 5.717222
 HinfI
  1 AATACGGTGAAGAGCAAATGAGAAACATTTCTTCAAACATTTGTAAAGTGAAAATATTTA
       >>>>>>>>>>>>>>>>>>>>>                                    

 61 AAATGAAATAGATnCCAAATTTTTTCTTCCAAtGGATTATCTACTGGGTTCTGAATATCA
                                                 <<<<<<<<<<<<<<<

121 CAAAGACAAATG
    <<<<<<<<<   

> Contig48_chr14_11839435_11843272 3014 A G 0.907583

  1 GTGCTTCCAGTCAAAGGGGAAAACTTGATAGACAAAAGTTTGGATTTTTTTTTTTTTCCT
       >>>>>>>>>>>>>>>>>>>>                                     

 61 TCTCCTTGGGAGTATGTCTGAGTTACCGTTTTTAGTTTTGATCTGTGGAAAAAGTGATTA
                                                                

121 TATAGGTTCCAAATCTTACTTTTCCCTTTTTGTTTTCAATAGACTTTTTGTGATCATTTC
                                                                

181 AnCATAGTTTGTATTATTAAGTAGGGGTTTTtTTTTGTTTTGGTTTTTTTGTGGTTGTGC
                                                 <<<<<<<<<<<<<<<

241 GTTGTAAG
    <<<<<   

> Contig28_chr14_26905747_26909514 975 G C 0.116622
 AluI
  1 CTGGTACGTGCTTCTCCTCCTGCAGCCCACCGTTTACTTGGTAAGTCGCTGCCGATCCGG
       >>>>>>>>>>>>>>>>>>>>                                     

 61 CGCCCCCGCAATCCCACCCTCGTCGCGAGGACAGACAACCAGGGGCGCGCGGGAGGAGGG
                                                                

121 TGAGACCGCCAGTTCAGCGGAGCAGCGTTCCTAGCGACCGTGTTGGAACAACTTTGGCAA
                                                                

181 nCTGGTCTTTGGATCCCTGCGGGATTTTTCGGGTTTCCCACCCTCATTTCTTGCTT
                                     <<<<<<<<<<<<<<<<<<<<   

> Contig64_chr14_56768376_56768902 473 C T 8.281311

  1 ATAAGAATCTCCTCAGTAGAGAGAAGCCTGATCTACCATGATTTTATTTGAGTAAAACCA
       >>>>>>>>>>>>>>>>>>>>>>>>>                                

 61 TTGAAACAAACAnTTCAAGAAAGATGGTCAGAGAAGCAAAATGTAA
                        <<<<<<<<<<<<<<<<<<<<<<<   

> Contig60_chr15_18493036_18494316 150 G A 0.125024

  1 CGCCTGGAATAGCATGGTGCCTTTAGGAAATTACATCTAACTCTCTAGGGCTGGAAGGAA
       >>>>>>>>>>>>>>>>>>>>                                     

 61 CACTGAGTnAACGTAAAGAATTGTGGGAGAGAAGCCTTTAGTTAGATCATGCAGGGCtCC
                                                                

121 GTGCTCCAAATGGGCTTTGTGTTTTG
       <<<<<<<<<<<<<<<<<<<<   

> Contig112_chr15_26772864_26773267 374 C T

> Contig119_chr16_6160274_6160477 180 G A

> Contig60_chr16_28079136_28080263 588 T G 5.998983
 NsiI
  1 TTAGAGAATTATTCACTCCCCCAAAAGTAATAAAAATATAAGAAACAAAGCATAATCATA
       >>>>>>>>>>>>>>>>>>>>>>                                   

 61 ATGCAnTGGTTGAGTTAGTAGTAAATAACATTTTAGGGTCATAAATTAAAAACTGAATTG
                                                                

121 AGATTTAGCTGGAAATTGTGATATAAATGTCAGGATAAGAGAAGCAAGATTGAAAGAAAG
                                                                

181 ATGGATTAAAAATGCTAAATCCTTCTCTACTATTACAGGAAATTGATAAAAGAAGAGAGA
                                                     <<<<<<<<<<<

241 GGAAACAGCACATAT
    <<<<<<<<<<<<   

> Contig31_chr17_12128267_12129637 205 G A 0.246305

  1 TGGAGGCAATGGAGGTGAATGAGCCCCAGTCCTGGACCTCgAAGCAGACTGGCCAGAGAC
       >>>>>>>>>>>>>>>>>>>>                                     

 61 ACCAGGATTTAAGGCATGTGATGAAGACACAGTTCAAAGTGACGAGCCCTGCAGACTCTT
                                                                

121 CnGGAGCAGAGgTAGAGTGATGACCCGTACCTGGAAGGTTTTAGGAAGGATAACAATGAA
                                                               <

181 TTTACCAGAAGGCAGGGGTAGA
    <<<<<<<<<<<<<<<<<<<   

> Contig99_chr17_26021506_26022200 505 C T 0.171977
 RsaI
  1 TGTTGCCATGTTGCCAGTATGTTTTTTTAAGTTTTCCTTTTTAATTTCATTTATGATATT
       >>>>>>>>>>>>>>>>>>>>                                     

 61 TTTTGGAGTAnaGAAGTTATCATTTCACATGATCAACTTTTCAGTCTTTTTCTTTATAAT
                                                                

121 TTTTAAcTTTGTTGTCATGTTTAGAAAGGTTAAATTTATACCTTGTAAAATAcCTTCgCA
                                                                

181 AATTTACATTTGGGAAATTATTAGTAGTATTATTTcAGGAAGTTaTTATTTTTAAGTGTT
                                                     <<<<<<<<<<<

241 GGGTTCCCGTGA
    <<<<<<<<<   

> Contig27_chr17_61713766_61716585 1056 G C 2.199527
 Eco47III,HaeII
  1 AAGAGGCGCAGGAAGGAGAGTCCGCCcGCCGCAGCCCGCCCGCCGGCTCCTCAGACAGCn
       >>>>>>>>>>>>>>>>>>                                       

 61 CTCGCaGGTCCTCCAGCCTTCCAGCGAGAAGAAAGAAAGAGCGTCACCGGAAACCACCGA
                                                          <<<<<<

121 AACTCTGGGGTAGAGCG
    <<<<<<<<<<<<<<   

> Contig229_chr18_3706523_3708577 1076 A G 0.444778

  1 TTTAAACTCCCGTGTCTGTGCTTGATTATGGCACCGTTAcTCTCGGACGTATTTAATTTT
       >>>>>>>>>>>>>>>>>>>>                                     

 61 CTGATTCTGATTCATTGGTCTATTACATGAGCAATTGGTGGnAAGTGATGTCTGTCTGTG
                                                                

121 GCCCTTACATTATTTATAATAAAACTCTCCTTCAAAGAACCTTTGGACGATGTCTCCACA
                                                                

181 ATTACAGAATGAGTACAAATTAGTTTTCTAAAACAGCAACTGGTGGTTAATTAAGTTTTG
                                                                

241 TCATGTTTTCTGGAGATGAGTGTCTCATGGTTTGGATACTATGAAGGCATTTCTGCAAGG
                                            <<<<<<<<<<<<<<<<<<<<

301 TT
      

> Contig82_chr18_27305489_27306229 566 C T 0.348750

  1 CCTGAGAACTTCAAGCTCAGCGGAGGGCTGAAAGGGAGGTAACCACTTTTGTACTAAATT
       >>>>>>>>>>>>>>>>>>>>                                     

 61 GTCACCTCCTTGCTTATTTTCGTGAAGTTCTAAAGAACACAACTATCTCACTAACACAAc
                                                                

121 AGATTTATTATTGAGTTGTCAGAATCAGCAGCTTTTAGTCACngGTCACTTGTGTGCCTC
                                                        <<<<<<<<

181 CACTCCATCATAACT
    <<<<<<<<<<<<   

> Contig64_chr18_55979770_55980315 49 G A 2.123800

  1 CCCCAAGGAGACAGGAGGGCAGGCTGTGTGGGTTTCCTGGCCCGCAAnCCCTGTGCAGGT
       >>>>>>>>>>>>>>>>>>>                                      

 61 GCGgTTCTGCCAGGCCCGCAAATCTCGGTCTCACTTAACTGCGGCATCATTTATGCTAAT
                                          <<<<<<<<<<<<<<<<<<<<  

121 G
     

> Contig146_chr19_5221790_5223013 143 A G 0.869806

  1 TTAGAATGGCTTTTTCACGGAAGGAGATGAGTTATAAAGTACGGgTGACATTTTTTTGTC
       >>>>>>>>>>>>>>>>>>>>                                     

 61 TTGnGTTTTTTTTTTTTGTCTTGTTTTTAACTGTTGTTTAAGTCAGCCAACAAGTACATA
                                                                

121 ATTTCTCAGCCCACATTTAAAAATTATCAACTCATTTTCACTTGGAGGTGTGGACATAAA
                                                                

181 GCCATAAATATAATTTGCATTCTGCTGACCTGTTTC
                 <<<<<<<<<<<<<<<<<<<<   

> Contig129_chr19_25541958_25542221 202 T C 2.550968
 HinfI
  1 AAGAATCAAGCATGCATTCTGCCTTCCCCATGTGAAAAGTACCAGGTGAGGATATGTACC
       >>>>>>>>>>>>>>>>>>>>                                     

 61 TCTTTATATCCATGTTCCAAGAACAACAACAACAACAAAAGAATGAGAGTnACCACTTTA
                                                                

121 CAACCCCCAAAGAATTAATGGATT
    <<<<<<<<<<<<<<<<<<<<<   

> Contig60_chr19_54013816_54014398 281 A G 1.271267

  1 ATTTCTCTCGCCGATATTGAGGTTAAGTATCCCTCTAGGCTAAAAGACCAGCAGCTTTTC
       >>>>>>>>>>>>>>>>>>>>                                     

 61 TTAAACCTATTACAGGAATCCCAATAATGGAAAGAAACGAGGGGAGGCAGTGCTCATGTC
                                                                

121 ACATTCTTCCAGAAATCAAATATAnTGGGTTTTTTTGTTGACGTAAATACATAGGTTGGA
                                                                

181 AAAAAGGTAGGGGGAAAGGAAAA
    <<<<<<<<<<<<<<<<<<<<   

> Contig50_chr20_12138509_12141975 3206 C A 0.383804

  1 TCACACCAGGCTCAAGGTTAAGGCAGAACACAAGATAAGAGAGCAAGCTGGCTTCCTGTC
       >>>>>>>>>>>>>>>>>>>>                                     

 61 CCCCAGCTGGCtTnCCCATGGGAGCAGAAGCTGGATGGGTGCAGCTGCTGGCTAGGGATC
                                                                

121 CTGTAAAAACTGAAGACCTCCaGTCTCCAGGGCTGGAGGaGGGATTCCTGCCCTGGGGGC
                                                                

181 AGGCCaGATGAGAGGGATGCGATAATGGCAGGTGTCTCCACAAGA
                          <<<<<<<<<<<<<<<<<<<<   

> Contig36_chr20_32631363_32632049 176 G A 1.149790

  1 CTGCCCGAAACAAGTTCCTCATTGTTTCCTnCGTTCTGTGCTGTGGCGGTTTCTTCCTGG
       >>>>>>>>>>>>>>>>>>>>                                     

 61 ACCCAGAGTCCTTTTCcGAACATTAGCAACTCCATTATGCCACACAGAGATGAGATTTGA
                                                                

121 GAAAGGAAAATAAAGTTGTCTCGTGATATGGAGGGCAAAGCTGATAG
                            <<<<<<<<<<<<<<<<<<<<   

> Contig50_chr21_4178523_4178687 121 G A 0.483377

  1 GTAGGAATCTCAAGCCCCAATCTACTTTTCAGGAAGCTGAGGCTCAGAGAAGTAAAGTAA
       >>>>>>>>>>>>>>>>>>>>                                     

 61 CATGCTCAAATTCACACCAGTAAGTGAGAGAGTTnTAAGTAACTATAGTAAGTGACAGAG
                                                            <<<<

121 CTGGGATTTGAACCCTCAT
    <<<<<<<<<<<<<<<<   

> Contig129_chr21_31045749_31046924 381 A G 0.028026
 AcyI,Hsp92I
  1 CAGCTGAAGCACCCTCTCTGACCAAACCTGATCTTTCTTTTGGGGATCCTTGACnTCTCA
       >>>>>>>>>>>>>>>>>>>>                                     

 61 TAAGTCTTTATGAACCATTTGTCCTTCCAGCCATCATTTCCTTCAAC
                            <<<<<<<<<<<<<<<<<<<<   

> Contig159_chr22_7896450_7896974 109 G C 0.465232

  1 TAACTGAGTGATAGTGCTTGGcGCAAGACACTAGCAAnCCTGTACTCACCTTCCATTCAT
       >>>>>>>>>>>>>>>>>>>>                                     

 61 TTATGTCATAATAATAATTCTTTAAATATGGAAAGcGTAgAAACAAAATAGGAACACTGC
                                                                

121 TAAGTATTCATTTAGGTAATAAGTTTAGTGCTAGATGTGTGACAGGAATTATTTTcATTA
                                                                

181 ACCACAAGCAAACATTTATGGAATGTCCATTGCATGCTGAAATGTA
                           <<<<<<<<<<<<<<<<<<<<   

> Contig23_chr22_34612023_34612568 167 C G 0.409430

  1 TATTCTACCACTCAAAGCCAGCCTGAAGGAAnCCTGGGcTCTTTCCATCAGCTATCTGAC
       >>>>>>>>>>>>>>>>>>>>                                     

 61 AAGTTGATCTAAAcgTGTAGAAAGCATGCCTGGCTCCACACCTGATTTCATGTGGAGCCA
                                                                

121 TCAGCTCTCACACGATCACCTTG
    <<<<<<<<<<<<<<<<<<<<   

> Contig26_chr22_57817664_57819633 1453 A G 0.471213
 RsaI
  1 TGCcCACCCACATCAcTGAACAATTCAGAGAAGATTCCTTTAACATATGCATTCAATGTT
       >>>>>>>>>>>>>>>>>>>>                                     

 61 TAAGCCTCGCTAACATTTTTTAAGCACCGAACCTTTTTAAAAAGGGCTCTAAAAAATAAG
                                                                

121 CATGAAACTAAATCTCTCTAATACgTCACGTGACACACATGTAtATAACCCAGAAGGTnC
                                                                

181 ATCTAGGGAAACGCAAAAGGAATTATG
        <<<<<<<<<<<<<<<<<<<<   

> Contig133_chr23_3525134_3526502 1223 A G 1.358849

  1 TCCTATTTTGTCCCCAAGTCCCAGGTTCAGGAGCTCCATTAAGTCACAGGTAATTCAGCT
       >>>>>>>>>>>>>>>>>>>>                                     

 61 GAGAGCCTGCAAAATGGCAACCCCACCTGAGGCACTTTCTTTAAATCAACTGTATCAAGG
                                                                

121 TAACATTTACACAGAATAAnAAGCACTCATTTTAAAGAAATAGCTTGATGAGTTTAGTCT
                                                                

181 AATTGTATCTGTGTAGCCACcACACAGTCAAGATa
               <<<<<<<<<<<<<<<<<<<<<   

> Contig35_chr23_28447813_28449115 70 T A 0.163155
 DdeI
  1 CCTTTTCTCTCCATTCACACCCCATCCTTCTTnGTCCCTCCAAAACTCCTAGCTGTTTCC
       >>>>>>>>>>>>>>>>>>>>                                     

 61 CATTTTAGGGTCTCTGCATTTGCTGTTCCAAGCAAGCTCTGCCCCCAAATGATCTGGTGG
                                                    <<<<<<<<<<<<

121 CTTGTTCCCTC
    <<<<<<<<   

> Contig50_chr24_22515247_22516072 761 C T 0.190253

  1 GGGGAGACCCTGATCCATCCTCATTCTACTGCTTCCCGATGTCCCAGGCCTGCtGTTCTA
       >>>>>>>>>>>>>>>>>>>>                                     

 61 CACGAAAGCCCATTCngTGCCTCCAAGTAGGGAGCAGAAGGGAAGAACACA
                                <<<<<<<<<<<<<<<<<<<<   

> Contig84_chr24_29196623_29199644 466 C T 0.214603

  1 TAATTGGACaCTTTTGACTTGCGTTTCATGATTTTGCCCCATTTTTCTCTGCnGCAATTT
       >>>>>>>>>>>>>>>>>>>>                                     

 61 GGCCAGTGATTCCTGTCTTTCCCTCTATTATCCACTCTGATTAACTCAGCTGCACCTGCC
                                                         <<<<<<<

121 AGCCTTTATTCCTGCA
    <<<<<<<<<<<<<   

> Contig144_chr25_4011170_4013134 541 A G 0.086768

  1 GGTGAGGtGGAGAGTGGCAAGAGCTGTTGGTGGGCGTGTGTGAGCCAGAGGGCAAGCGGG
       >>>>>>>>>>>>>>>>>>>>                                     

 61 GAGCTCCTAACTGCAAcATCCAGGGGCAGTCGATACTGCCTGGGAAGTAGGAACTGCTCT
                                                                

121 GGAGCATGAGTGGAATTAGCAGATGGATAACAAGGGAGnGCGAcaAGGGCATTTTATGAA
                                                                

181 GATGGAACACCTTGGAAAAGATCAGATTGCTGAAGCATCCGTTTGAGAAAGCACAGATAA
                                                                

241 CTTTTCAAATCTGAAGAGGAGGGACATGACGGGGAGATGAGACTAG
                           <<<<<<<<<<<<<<<<<<<<   

> Contig103_chr25_38891221_38892140 407 G A 0.166581
 Alw44I,Bsp1286I,CfoI,HhaI
  1 GTGGGATGCAGGTGCTGTGTCTACCCACTTCTTCCGGGGACCAGCCCCTCTCTGGCCACA
       >>>>>>>>>>>>>>>>>>>>                                     

 61 CCCACTTCCTCTCATCTTAACTGTCCAAATTTGCTGACTCAAAGGGATGTGTGTGCGTAT
                                                                

121 GTGTGTGTGTGCnCACATGTGCATGCATGTGTTTTGTGTCTTTCACTCTCAAAATTATTT
                                                                

181 AAGTTCCCATGGCCCTGCCCTGATTTATCTCCCAAAT
                  <<<<<<<<<<<<<<<<<<<<   

> Contig204_chr26_4311195_4311778 170 C T 0.085422

  1 AACAGAAGCCTGTCCCAGCTACAGGAGGGAAACGGGCTCGGCAgCgTGGCACTGCCTCAC
       >>>>>>>>>>>>>>>>>>>>                                     

 61 tGTCACCCCCAGGAGCCCGGGAAGCCGTCCCTTGAnTCCTCAGTGACGGTGACCATGACC
                                                                

121 AAGGGCAGTAACTCTGCCCGCGGGACACAGCgCTCCTGCTCCCgACgGAAGGTGTGCCGG
                                                                

181 CCACAGAGCGCACGTTGgGGCCgAGTTCAGGGGCAGAtAGGAAGACACAGGa
                                 <<<<<<<<<<<<<<<<<<<<   

> Contig146_chr26_26622638_26623906 574 G A 0.318381

  1 TTTCTGAGATCACACAGCCAGGAAATGGGGAGCCAAGATTTGAACCCAAGCCTGTCTGAT
       >>>>>>>>>>>>>>>>>>>>                                     

 61 TCTGGAACCTGCACCAGAaCCACACCTCAgCCCTGCCTTCCCTTGGAAGGCTtACcnTTG
                                                                

121 TGCCTGGAACATAGTAAGTGCTCAAAAAATGGTcTAAATCATCATCGTGTaTTAGGAAGC
                                                                

181 CTGGGTCCACACCCCTTGGGCTGTGGAGTGTCTTGAG
                  <<<<<<<<<<<<<<<<<<<<   

> Contig135_chr27_6853874_6854079 158 C T 0.060201

  1 AAAGGGTTCCAAGTTACGGGATTcATACGGGAAGGCTCCcGAAATAGAAATGATCGTTGT
       >>>>>>>>>>>>>>>>>>>>                                     

 61 AACATGGGGAGATTTGTCAGGGACAgACAnGAACTGTCTTATAAAATGCAGCCCAGTTTT
                                                   <<<<<<<<<<<<<

121 CTTcTTGAGA
    <<<<<<<   

> Contig64_chr27_34654435_34654621 132 C A 0.296658
 RsaI
  1 AAATTGGTCAGTGACTGGGAACACGTTCCGAACCAGCTCCGTGGATTTACAAGTTTTCCA
       >>>>>>>>>>>>>>>>>>>>                                     

 61 GTAGAAACGGTCCTCCAAGCGTnCCTGAAGTGCTcATTCATTACCGCAAGGTG
                                  <<<<<<<<<<<<<<<<<<<<   

> Contig131_chr28_6481806_6483783 138 C T 0.387007

  1 AGaCCCTCGAAATTCTCCAGTTGTCAAATTCTTCCCCAGTnTCTGCTTGAgAGATTTTCT
       >>>>>>>>>>>>>>>>>>>>                                     

 61 CCTAGCTTCAGAGCCTTAACTACAGAATACTGAGTCTTTGCTCAAGCAGCGGCTCAACAC
                                                                

121 ATAACCCCTAAGCTGCCAAGGCTTTTCTCCCCCAAGACTTTGTTTCCTTCCACGAAACCT
                                           <<<<<<<<<<<<<<<<<<<< 

181 TC
      

> Contig60_chr28_30197166_30197364 92 T C 1.139483

  1 AATCAGAAAGTCCCAGAGGTGGAGACTACAGCAAATTACCTGACATTTGTCTTTGATGCT
       >>>>>>>>>>>>>>>>>>>>                                     

 61 nTATGTAAAAACTCTGGGTGGCAGGAAAGCACTTAAATTTACCTTGTAGAGCTTTGCTAC
                                                                

121 CCAATAGAACATTCTGTGCTGATGGGAATG
           <<<<<<<<<<<<<<<<<<<<   

> Contig29_chr29_4726399_4727143 559 A T 3.113735

  1 CTTTTTGTGGCCAAAAgTGACAACATAATTTTCAAAATGGGAAACGATGATTACAAATGA
       >>>>>>>>>>>>>>>>>>>>                                     

 61 GTGGAACACATGTTACAGTGGCAAGATGTGTGAGCAATGCTGATTCAGGGTATAATGGGT
                                                                

121 TGGTTGTAAAACAAATATGAGTTTCTAATATTCGGGCATATTAAACAATCTAAGTTnTAC
                                                                

181 AAAATCTCTCTTGTACTATTTATTGGGTAACTACTAGTAAAGGAAAGGCCTAATAGGCTG
                                                            <<<<

241 TTCCCATAAAAAGAAGCTAC
    <<<<<<<<<<<<<<<<<   

> Contig1_chr30_5992217_5993068 106 C T 1.078937

  1 CTTGAGACAGCCATGGTGTTTGTTTCTACCTTTCCTCTAAGAAGACACCTGTATACAGAT
       >>>>>>>>>>>>>>>>>>>>>                                    

 61 ATTCCnTGTGACTCACACTCATCCTCATAGACATCCCCAGTATCATTTCTGTGAAGCCTT
                                                           <<<<<

121 CCTTGACATTTTCCAACA
    <<<<<<<<<<<<<<<   

> Contig165_chr30_25804389_25804926 190 T C 0.328844

  1 CCGCTTGTCCCGCTCTGTGATTTAGATGTTTCACGAGCGGGAAGGTGGGGGGATTGATTC
       >>>>>>>>>>>>>>>>>>>>                                     

 61 TCTnATTCGCGCTTCTCCGCCCAGGCTGCGCATTAGAATCACTTGGGGAGCTTTAAAACA
                                               <<<<<<<<<<<<<<<<<

121 TGCCAG
    <<<   

> Contig38_chr31_5164423_5166573 2074 C T

> Contig17_chr31_26433828_26434459 498 T C 4.814134

  1 CCATGCAATCTCATGCAATGGTTAAAAGCAATGAATTTGTTGTACTCAAAATACCTTGGT
       >>>>>>>>>>>>>>>>>>>>                                     

 61 TGGGTATTAAAAAGTTTTnAGTAAACATAATGAAAAAAATAGAAGTAGATAAGATCAACA
                                                      <<<<<<<<<<

121 CACCTACACGAATTA
    <<<<<<<<<<<<   

> Contig9_chr32_19479532_19479735 12 A G

> Contig30_chr32_25902721_25905783 208 C G 0.322381
 AluI,HindIII
  1 TTCACAGTGTTCTCCCAAGGCACAAATAGAATGCTCAGTCATTGGTTATTTTACTTAGAT
       >>>>>>>>>>>>>>>>>>>>                                     

 61 ATTCCTTTCTAAATATAGACTTACCTGTTATTTTTTCCTATACTAATAACATTCAAATTA
                                                                

121 TCTATGTGTACAATAATAAACACTAGGCATAACTGTATCTCAGTACCAATTTCCTTAGAA
                                                                

181 GGTAAAnCTTATTTCAGTCAAGGTCTAGGCCAAGCATTGA
                     <<<<<<<<<<<<<<<<<<<<   

> Contig18_chr33_22207246_22209159 1363 G T 2.559961

  1 ACGACTGCCCTTTTTCCCTCTGTCTCTATTTCTCCTACACACACACACACACACACACAC
       >>>>>>>>>>>>>>>>>>>>                                     

 61 ACACAgAGTGAGCTTTTAGCAACCTTGTTTAACATTTGGAAAGGAATAGCTGACACAACA
                                                                

121 GAGGGGGGnATAAGTAAATACATTGCATGGCTGTATATAATTGAACATTCTTCAAATTCT
                                                                

181 TTAAACAGAAATTTCAGTACCATGGAGATCCTTGAAAT
                 <<<<<<<<<<<<<<<<<<<<<<   

> Contig170_chr33_26189421_26189940 292 T C 0.307330

  1 TTCAAGTTCCCCTTTTGTGCCTTCACACACTTGTnTTTATGGTCTCTATTTAAAAAAAAg
       >>>>>>>>>>>>>>>>>>>>                                     

 61 AGACAAAAACCTCTTAATAAATTTAGGAAGTAGTCCTCACTCTTTAAAGGAATTGTGCTT
                                                                

121 AAAGCAGCAGCTCTTCCTCACTCCTTG
        <<<<<<<<<<<<<<<<<<<<   

> Contig113_chr34_13341080_13341643 236 C T 0.412222
 Hsp92II,NcoI,StyI
  1 AAATGCTCATTTCCCAACATTCAGTGAAATGCCTGATGACTAATCCTTGCTCCaTGGATC
       >>>>>>>>>>>>>>>>>>>>                                     

 61 CTGGGGGTCCCGTGCACAGAAGAGGGTGAGGTCTCTGCCAnGGACTGTGTCCCTGGAAAT
                                                  <<<<<<<<<<<<<<

121 GACAGGGCA
    <<<<<<   

> Contig152_chr34_31794848_31795540 242 G A 2.779642

  1 ATAGGAAATAAAACCCCAGCTCTCAGAGnAAAGCAAAATACTTTTAAAAAGATGAAAAAG
       >>>>>>>>>>>>>>>>>>>>                                     

 61 CATCAGAGCTATGAGACACAGAAGATCTAGAGTATAATTGTGTTTTTGTATAGAAGGGAG
                                                                

121 AGAAGGAATGCTGCAGGAGCCACATTTCTCCATCTA
                 <<<<<<<<<<<<<<<<<<<<   

> Contig47_chr35_3666773_3667898 348 G T 0.234571

  1 GCTGCCTCAGCAGTTATCTTGGGTTCTGTTAACTTTGACACACCTTTCACGAAGAAATTC
       >>>>>>>>>>>>>>>>>>>>                                     

 61 TTCATTGCAGTGCTTGAACAATCTGATTGTTCAATCTGATTnGATTCTATTTCTTGCTGA
                                                                

121 GATAATGTTCTAGCACCTTCTCTGTGGATCCCCTTAT
                  <<<<<<<<<<<<<<<<<<<<   

> Contig74_chr35_25394343_25394813 303 A T 4.297720

  1 AGTTTCCCCAAATGTTCATGATTAACCAGGTAAACTGAAGATTAACCTTAAATATATATT
       >>>>>>>>>>>>>>>>>>>>                                     

 61 TCTTTGAGTCATTATAATTAAATTAACTAGGTTGTTTTCAAATATACTAATAATAGAAAC
                                                                

121 TGAAAAAATAATCCAAGTAATATaTCTGAATTGAAAAAAAAAGTAAGGCCATTGTATAAA
                                                                

181 ACAACTGAAAGTTTTTGGAnAAGGTACTATTTTTAATTTACAGTGCATTTTTTTAATCGG
                                                                

241 CATTTCAAATAATAACTTCAATCaCACACACAAAAATAAACCAAATCAACTGCATGTAAG
                                             <<<<<<<<<<<<<<<<<<<

301 GGaAGT
    <<<   

> Contig5_chr36_4562983_4563634 343 C T 1.168507

  1 ATATGAATGGTGGTGATGGATTCAGCATCTTGACTCTTTTTCAACTATGTCAAGATTTGC
       >>>>>>>>>>>>>>>>>>>>                                     

 61 ACTGGATCTTGTCTAAAGTCACTCTTCTAGGGGAAGTCAAAGAGACTGGGTCaGTCCtCA
                                                                

121 AGATAcGATGTAAGCAGGTAAGATAGCACTATAGTAGGTCTTCTTGTCATGGTGAGTCAA
                                                                

181 TAACCATTCAATATTCTTTCnACCTACTCTTTACCTGCTCAATCAAGGTAGGGGTC
                                     <<<<<<<<<<<<<<<<<<<<   

> Contig133_chr36_32954045_32955409 136 A G 3.772017
 TaqI
  1 ATTAAATGAAAACAGTGTCAGGCAATAAGATGTATTAAGTACAGTATGCCTGAGGATATA
       >>>>>>>>>>>>>>>>>>>>>>                                   

 61 ATATTAAACACAGATTCTGCTGTTACTATCnAAGTGGATATTAAAATAACAGTGCTACTT
                                                                

121 TGAGGGTAATGCTACTTTGGAGAATATTTTCTAATAAGCTCACCaTAAAATGACggATAA
                                         <<<<<<<<<<<<<<<<<<<<   

> Contig53_chr37_6665763_6665919 116 C T 10.874746
 BstOI
  1 AGTCCTCATGTTGTACTTTACCTCACCTGAATTTACTCATCtGATAGTTGGAAATTTGTA
       >>>>>>>>>>>>>>>>>>>>>>>>                                 

 61 TCCATTGCCCATCtTCACCACCCCATGTCnCTGGAAACCAACAAtCTGTTCTCTGTATGa
                                       <<<<<<<<<<<<<<<<<<<<<<<<<

121 CTT
       

> Contig2_chr37_31197993_31198256 182 C T 0.594606

  1 CTCTCACCACATGGAGAATCCTGTATGTTCAGCTGTATGACGTGGGGGGAACGTCAGAGC
       >>>>>>>>>>>>>>>>>>>>                                     

 61 TCAGTTTCATAGCAGTCAGCTCCATGTTATGGGTTCAAgAnGAAAACAGGTGGCAGGCtT
                                                                

121 GCCACAGCCTCCCTCAGGGGTGgCCTTGACAGATAAAcGT
                     <<<<<<<<<<<<<<<<<<<<   

> Contig7_chr38_12217200_12218387 1163 A T

> Contig265_chrX_2689247_2689484 114 C G 9.232233

  1 CTTAGAGAATTCCCTGATTCACTGAGTTAAATTATTACCAAATCTGATAATAATAAAAGA
       >>>>>>>>>>>>>>>>>>>>>>>                                  

 61 AGTAATTACAGATCAATAATTAATCTATATGTCTGAATACATTTTAATAAGTCCnAcTCA
                                                                

121 ACAATATGCTGACAAAACAATACATCTTGTCT
          <<<<<<<<<<<<<<<<<<<<<<<   

> Contig113_chrX_26287829_26288398 385 C T 0.077485

  1 AAAGCCGTAACAGTCGCTAGGAGAATCATAATTTTAAGCTTTGTGTGTCCCGGGcTTGAG
       >>>>>>>>>>>>>>>>>>>>                                     

 61 TCCCTCAGGAGTAGTTAGATGCGGCCTTAAATTCTCcCAGTAAATTCACnTTGACGGCCT
                                                                

121 ATTTTTGACCTGGGGGCACACGCTGCTATACACTCTAGCCACCTCTGATCCTCTGGCCTC
                                                                

181 CTCTGTTACAATGACAGAAACGACAGAAGCATTTCTTTAAAATAAGTCCCAGTACGTGCA
                                                                

241 CACAAACGTTCAGGGCAGCCTTCTCCATAAACGGCACGAAATGGC
                          <<<<<<<<<<<<<<<<<<<<   

> Contig90_chrX_57430715_57431566 548 C T 0.153995
 EcoRV
  1 CTCATTCCCAGCTACCTCCACCTCTATACCAACCCCTAGTTCCTGTACATCCCTGCTTCT
       >>>>>>>>>>>>>>>>>>>>                                     

 61 ATAGGAAATCTTCCTGGTGTTGATATnATTCCCAAGGTCAGGCTGTCCTCCTAGCTCCCT
                                                                

121 CTCCTCATCTGCATCAAGTCCTCCAAACTGGGCAGTAGAC
                     <<<<<<<<<<<<<<<<<<<<   

> Contig133_chrX_84833782_84834125 182 G A 0.277794

  1 CACCAGAGTGCAATCGAGAACCATCTGATCACAGAACCATAGAAAAGATTGCTGTACAAG
       >>>>>>>>>>>>>>>>>>>>                                     

 61 ACTTAGGAACTCATTCTGTTCAGGATGGAGAAGCTGATGCCCAAAAAGGGAAAGGAACTT
                                                                

121 AACCAAAGTCCATACAnTATCAACTCTACACATAAAGGAAGGGAGTGGAGGGAGCAGTAA
                                                                

181 GACCAGAGATATAGACCCCAGTGAGGAGGCTGTGAGCTCCTG
                       <<<<<<<<<<<<<<<<<<<<