Mercurial > repos > miller-lab > genome_diversity
changeset 23:66a183c44dd5
bugfix for Pathway Image tool
| author | Richard Burhans <burhans@bx.psu.edu> |
|---|---|
| date | Wed, 22 May 2013 15:58:18 -0400 |
| parents | 95a05c1ef5d5 |
| children | 248b06e86022 |
| files | mkpthwpng.py pathway_image.xml |
| diffstat | 2 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/mkpthwpng.py Mon Mar 11 11:28:06 2013 -0400 +++ b/mkpthwpng.py Wed May 22 15:58:18 2013 -0400 @@ -30,7 +30,7 @@ forms = mechanize.ParseResponse(response, backwards_compat=False) form=forms[0] form["unclassified"]=inpx - form["org_name"]=[sppPrefx] + form["org"]=sppPrefx request2 = form.click() response2 = mechanize.urlopen(request2) a=str(response2.read()).split('href="/kegg-bin/show_pathway?')[1]
--- a/pathway_image.xml Mon Mar 11 11:28:06 2013 -0400 +++ b/pathway_image.xml Wed May 22 15:58:18 2013 -0400 @@ -1,4 +1,4 @@ -<tool id="gd_pathway_image" name="Pathway Image" version="1.0.0"> +<tool id="gd_pathway_image" name="Pathway Image" version="1.1.0"> <description>: Draw a KEGG pathway, highlighting specified gene modules</description> <command interpreter="python">