Mercurial > repos > miller-lab > genome_diversity
changeset 5:8a1147101f85
added 3rd party software
| author | Richard Burhans <burhans@bx.psu.edu> |
|---|---|
| date | Tue, 10 Apr 2012 12:49:47 -0400 |
| parents | 7a94f11fe71f |
| children | 626b714f72bb |
| files | README |
| diffstat | 1 files changed, 9 insertions(+), 3 deletions(-) [+] |
line wrap: on
line diff
--- a/README Tue Apr 10 11:58:44 2012 -0400 +++ b/README Tue Apr 10 12:49:47 2012 -0400 @@ -2,6 +2,12 @@ the genome_diversity directory. Additionally, you'll need the following python modules: - matplotlib (we used version 1.1.0) http://pypi.python.org/packages/source/m/matplotlib/ - mechanize (we used version 0.2.5) http://pypi.python.org/packages/source/m/mechanize/ - networkx (we used version 1.6) http://pypi.python.org/packages/source/n/networkx/ + matplotlib (we used version 1.1.0) http://pypi.python.org/packages/source/m/matplotlib/ + mechanize (we used version 0.2.5) http://pypi.python.org/packages/source/m/mechanize/ + networkx (we used version 1.6) http://pypi.python.org/packages/source/n/networkx/ + +And the following software: + ADMIXTURE (we used version 1.22 ) http://www.genetics.ucla.edu/software/admixture/ + EIGENSOFT (we used version 3.0) http://genepath.med.harvard.edu/~reich/Software.htm + PHAST (we used version 1.2.1) http://compgen.bscb.cornell.edu/phast/ + QuickTree (we used version 1.1) http://www.sanger.ac.uk/resources/software/quicktree/