Mercurial > repos > miller-lab > package_phast_1_3

comparison tool_dependencies.xml @ 0:1d3d3e3b8451

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Initial version
author miller-lab
date Mon, 09 Sep 2013 13:48:52 -0400
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children f633177177b9
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-1:000000000000 0:1d3d3e3b8451
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="clapack" version="3.2.1">
4 <repository prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu/" owner="miller-lab" name="package_clapack_3_2_1" changeset_revision="c9c9e17ee608" />
5 </package>
6
7 <package name="phast" version="1.3">
8 <install version="1.0">
9 <actions>
10 <!-- Download source code -->
11 <action type="download_by_url" target_filename="phast-1.3.tar.gz">http://compgen.bscb.cornell.edu/phast/downloads/phast.v1_3.tgz</action>
12
13 <!-- Get CLAPACKPATH from clapack package -->
14 <action type="set_environment_for_install">
15 <repository toolshed="toolshed.g2.bx.psu.edu" owner="miller-lab" name="package_clapack_3_2_1" changeset_revision="c9c9e17ee608">
16 <package name="clapack" version="3.2.1" />
17 </repository>
18 </action>
19
20 <!-- Build phast -->
21 <action type="change_directory">src</action>
22 <action type="shell_command">make</action>
23 <action type="change_directory">..</action>
24
25 <!-- Install phast -->
26 <action type="shell_command">cp -R bin $INSTALL_DIR</action>
27
28 <!-- Set environment for dependent repositories -->
29 <action type="set_environment">
30 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
31 </action>
32 </actions>
33 </install>
34 </package>
35 </tool_dependency>