Mercurial > repos > miller-lab > package_raxml_7_7_6

annotate tool_dependencies.xml @ 0:77f73a8c45be draft default tip

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Initial version
author miller-lab
date Thu, 19 Sep 2013 18:09:26 -0400
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="raxml" version="7.7.6">
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4 <install version="1.0">
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5 <actions>
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6 <!-- Download source code -->
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7 <action type="download_by_url" target_filename="standard-RAxML-7.7.6.tar.gz">https://github.com/stamatak/standard-RAxML/archive/v7.7.6.tar.gz</action>
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8
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9 <!-- Build raxml -->
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10 <action type="shell_command">make -f Makefile.gcc</action>
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11
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12 <!-- Install raxml -->
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13 <action type="shell_command">mkdir -p $INSTALL_DIR/bin</action>
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14 <action type="shell_command">cp raxmlHPC $INSTALL_DIR/bin</action>
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15
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16 <!-- Set environment for dependent repositories -->
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17 <action type="set_environment">
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18 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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19 </action>
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20 </actions>
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21 </install>
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22 </package>
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23 </tool_dependency>