Mercurial > repos > miller-lab > package_raxml_7_7_6

changeset 0:77f73a8c45be draft default tip

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Initial version
author miller-lab
date Thu, 19 Sep 2013 18:09:26 -0400
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 23 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Sep 19 18:09:26 2013 -0400
@@ -0,0 +1,23 @@
+<?xml version="1.0"?>
+<tool_dependency>
+  <package name="raxml" version="7.7.6">
+    <install version="1.0">
+      <actions>
+        <!-- Download source code -->
+        <action type="download_by_url" target_filename="standard-RAxML-7.7.6.tar.gz">https://github.com/stamatak/standard-RAxML/archive/v7.7.6.tar.gz</action>
+
+        <!-- Build raxml -->
+        <action type="shell_command">make -f Makefile.gcc</action>
+
+        <!-- Install raxml -->
+        <action type="shell_command">mkdir -p $INSTALL_DIR/bin</action>
+        <action type="shell_command">cp raxmlHPC $INSTALL_DIR/bin</action>
+
+        <!-- Set environment for dependent repositories -->
+        <action type="set_environment">
+          <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+        </action>
+      </actions>
+    </install>
+  </package>
+</tool_dependency>