Mercurial > repos > miller-lab > snp_analysis_conversion
view test-data/master2snp_output.txt @ 3:edf12470a1a6 default tip
Bugfix from Belinda, in vcf2pgSnp.pl
author | Cathy Riemer <cathy+hg@bx.psu.edu> |
---|---|
date | Thu, 19 Mar 2015 12:06:34 -0400 |
parents | 35c20b109be5 |
children |
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#{"column_names":["chr","pos","A","B","Q","1A","1B","1G","1Q"], #"individuals":[["na",6]], #"dbkey":"hg19","pos":2,"rPos":2,"ref":1,"scaffold":1,"species":"hg19"} chr1 41980 A G -1 0 1 0 76 chr1 51672 T C -1 0 1 0 53 chr1 52237 T G -1 0 7 0 63 chr1 53205 G C -1 30 7 1 93 chr1 54042 C T -1 10 3 1 66 chr1 54585 T C -1 19 9 1 94 chr1 55163 C A -1 0 9 0 76 chr1 55301 C T -1 19 15 1 87 chr1 55321 C T -1 12 12 1 95 chr1 55325 T C -1 11 12 1 95 chr1 55925 T C -1 0 12 0 66 chr1 57951 A C -1 0 2 0 72 chr1 58210 A G -1 0 11 0 98 chr1 59050 A G -1 21 6 1 66 chr1 59343 C T -1 23 25 1 57 chr1 59497 T C -1 15 12 1 74 chr1 60828 C T -1 11 1 1 60 chr1 61441 A G -1 0 8 0 23 chr1 68305 C T -1 20 27 1 44 chr1 68315 T C -1 20 27 1 44 chr1 69452 G A -1 37 6 1 61 chr1 69510 A G -1 0 3 0 123 chr1 69551 G C -1 27 4 1 98 chr1 69568 T C -1 29 3 1 98 chr1 77461 G A -1 0 4 0 26 chr1 82733 T C -1 17 18 1 42 chr1 233472 C G -1 42 21 1 118