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1 ---
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2 output: html_document
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3 ---
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4
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5 ```{r setup, include=FALSE, warning=FALSE, message=FALSE}
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6 knitr::opts_chunk$set(
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7 echo = as.logical(opt$X_e),
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8 error = TRUE,
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9 eval = TRUE
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10 )
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11 ```
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12
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13 # Kmer Content {.tabset}
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14
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15 ## Before
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16
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17 ```{r 'Kmer Content (before)', fig.width=10}
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18 kc_1 = extract_data_module(paste0(opt$X_d, '/read_1_fastqc/fastqc_data.txt'), 'Kmer Content')
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19 knitr::kable(kc_1)
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20 ```
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21
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22 ## After
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23 ```{r 'Kmer Content (after)', fig.width=10}
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24 kc_2 = extract_data_module(paste0(opt$X_d, '/read_2_fastqc/fastqc_data.txt'), 'Kmer Content')
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25 knitr::kable(kc_2)
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26 ```
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