Mercurial > repos > mingchen0919 > aurora_fastqc_site

comparison 11_kmer_content.Rmd @ 0:b7c115edd970 draft

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planemo upload
author mingchen0919
date Tue, 27 Feb 2018 10:37:12 -0500
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children c64267b9f754
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-1:000000000000 0:b7c115edd970
1 ---
2 output: html_document
3 ---
4
5 ```{r setup, include=FALSE, warning=FALSE, message=FALSE}
6 knitr::opts_chunk$set(
7 echo = as.logical(opt$X_e),
8 error = TRUE,
9 eval = TRUE
10 )
11 ```
12
13 # Kmer Content {.tabset}
14
15 ## Before
16
17 ```{r 'Kmer Content (before)', fig.width=10}
18 kc_1 = extract_data_module(paste0(opt$X_d, '/read_1_fastqc/fastqc_data.txt'), 'Kmer Content')
19 knitr::kable(kc_1)
20 ```
21
22 ## After
23 ```{r 'Kmer Content (after)', fig.width=10}
24 kc_2 = extract_data_module(paste0(opt$X_d, '/read_2_fastqc/fastqc_data.txt'), 'Kmer Content')
25 knitr::kable(kc_2)
26 ```