--- a/11_kmer_content.Rmd	Tue Feb 27 10:40:20 2018 -0500
+++ b/11_kmer_content.Rmd	Sun Dec 30 12:48:14 2018 -0500
@@ -3,24 +3,22 @@
 ---
 
 ```{r setup, include=FALSE, warning=FALSE, message=FALSE}
-knitr::opts_chunk$set(
-  echo = as.logical(opt$X_e),
-  error = TRUE,
-  eval = TRUE
-)
+knitr::opts_knit$set(progress = FALSE)
+knitr::opts_chunk$set(error = TRUE, echo = FALSE)
 ```
 
-# Kmer Content {.tabset}
+### Kmer Content {.tabset}
 
-## Before
+#### Before
 
 ```{r 'Kmer Content (before)', fig.width=10}
 kc_1 = extract_data_module(paste0(opt$X_d, '/read_1_fastqc/fastqc_data.txt'), 'Kmer Content')
 knitr::kable(kc_1)
 ```
 
-## After
+#### After
 ```{r 'Kmer Content (after)', fig.width=10}
 kc_2 = extract_data_module(paste0(opt$X_d, '/read_2_fastqc/fastqc_data.txt'), 'Kmer Content')
 knitr::kable(kc_2)
 ```
+