Mercurial > repos > mingchen0919 > aurora_fastqc_site
view 11_kmer_content.Rmd @ 1:92e3de11b9f8 draft
remove fastqc_report.Rmd
author | mingchen0919 |
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date | Tue, 27 Feb 2018 10:40:20 -0500 |
parents | b7c115edd970 |
children | c64267b9f754 |
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--- output: html_document --- ```{r setup, include=FALSE, warning=FALSE, message=FALSE} knitr::opts_chunk$set( echo = as.logical(opt$X_e), error = TRUE, eval = TRUE ) ``` # Kmer Content {.tabset} ## Before ```{r 'Kmer Content (before)', fig.width=10} kc_1 = extract_data_module(paste0(opt$X_d, '/read_1_fastqc/fastqc_data.txt'), 'Kmer Content') knitr::kable(kc_1) ``` ## After ```{r 'Kmer Content (after)', fig.width=10} kc_2 = extract_data_module(paste0(opt$X_d, '/read_2_fastqc/fastqc_data.txt'), 'Kmer Content') knitr::kable(kc_2) ```