name: "FastQC Website"
output_dir: "."
navbar:
    title: "FastQC"
    type: inverse
    left:
        - text: "Evaluation Overview"
          href: 01_evaluation_overview.html
        - text: "Evaluation by data module"
          menu:
            - text: "Per Base Sequence Quality"
              href: 02_per_base_sequence_quality.html
            - text: "Per Tile Sequence Quality"
              href: 03_per_tile_sequence_quality.html
            - text: "Per Sequence Quality Score"
              href: 04_per_sequence_quality_score.html
            - text: "Per Base Sequence Content"
              href: 05_per_base_sequence_content.html
            - text: "Per Sequence GC Content"
              href: 06_per_sequence_gc_content.html
            - text: "Per Base N Content"
              href: 07_per_base_n_content.html
            - text: "Sequence Length Distribution"
              href: 08_sequence_length_distribution.html
            - text: "Sequence Duplication Levels"
              href: 09_sequence_duplication_levels.html
            - text: "Adapter Content"
              href: 10_adapter_content.html
            - text: "Kmer Content"
              href: 11_kmer_content.html

output:
  html_document:
    theme: cosmo
    highlight: textmate