Mercurial > repos > mingchen0919 > aurora_htseq

annotate expose-outputs-to-galaxy-history.sh @ 2:e08dd15646c6 draft

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planemo upload commit 004a320fc0619c234164b44c64ba5dce205734e1-dirty
author mingchen0919
date Thu, 13 Dec 2018 23:45:31 -0500
parents 803f4888f36a
children
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803f4888f36a planemo upload commit 004a320fc0619c234164b44c64ba5dce205734e1
mingchen0919
parents:
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1 # change directory to tool outputs directory
803f4888f36a planemo upload commit 004a320fc0619c234164b44c64ba5dce205734e1
mingchen0919
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2 cd ${REPORT_FILES_PATH}
803f4888f36a planemo upload commit 004a320fc0619c234164b44c64ba5dce205734e1
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3
803f4888f36a planemo upload commit 004a320fc0619c234164b44c64ba5dce205734e1
mingchen0919
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4 # copy outputs from tool outputs directory to corresponding galaxy output path
803f4888f36a planemo upload commit 004a320fc0619c234164b44c64ba5dce205734e1
mingchen0919
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5 if [ -e "rmarkdown_report.html" ]; then
803f4888f36a planemo upload commit 004a320fc0619c234164b44c64ba5dce205734e1
mingchen0919
parents:
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6 cp rmarkdown_report.html ${REPORT}
803f4888f36a planemo upload commit 004a320fc0619c234164b44c64ba5dce205734e1
mingchen0919
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7 fi
803f4888f36a planemo upload commit 004a320fc0619c234164b44c64ba5dce205734e1
mingchen0919
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8
803f4888f36a planemo upload commit 004a320fc0619c234164b44c64ba5dce205734e1
mingchen0919
parents:
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9 if [ -e "index.html" ]; then
803f4888f36a planemo upload commit 004a320fc0619c234164b44c64ba5dce205734e1
mingchen0919
parents:
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10 cp index.html ${REPORT}
803f4888f36a planemo upload commit 004a320fc0619c234164b44c64ba5dce205734e1
mingchen0919
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11 fi
803f4888f36a planemo upload commit 004a320fc0619c234164b44c64ba5dce205734e1
mingchen0919
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12
803f4888f36a planemo upload commit 004a320fc0619c234164b44c64ba5dce205734e1
mingchen0919
parents:
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13 if [ -e "count_data.csv" ];then
803f4888f36a planemo upload commit 004a320fc0619c234164b44c64ba5dce205734e1
mingchen0919
parents:
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14 cp count_data.csv ${X_c}
803f4888f36a planemo upload commit 004a320fc0619c234164b44c64ba5dce205734e1
mingchen0919
parents:
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15 fi