Mercurial > repos > mingchen0919 > aurora_skewer
comparison expose-outputs-to-galaxy-history.sh @ 0:0358f6f78adf draft
planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
| author | mingchen0919 |
|---|---|
| date | Fri, 14 Dec 2018 00:40:15 -0500 |
| parents | |
| children |
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| -1:000000000000 | 0:0358f6f78adf |
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| 1 # change directory to tool outputs directory | |
| 2 cd ${REPORT_FILES_PATH} | |
| 3 | |
| 4 # copy outputs from tool outputs directory to corresponding galaxy output path | |
| 5 if [ -e "rmarkdown_report.html" ]; then | |
| 6 cp rmarkdown_report.html ${REPORT} | |
| 7 fi | |
| 8 | |
| 9 if [ -e "index.html" ]; then | |
| 10 cp index.html ${REPORT} | |
| 11 fi | |
| 12 | |
| 13 | |
| 14 if [ -e trim-trimmed-pair1.fastq ]; then | |
| 15 cp trim-trimmed-pair1.fastq ${X_1} | |
| 16 fi | |
| 17 | |
| 18 if [ -e trim-trimmed-pair2.fastq ]; then | |
| 19 cp trim-trimmed-pair2.fastq ${X_2} | |
| 20 fi | |
| 21 | |
| 22 if [ -e trim-trimmed.fastq ]; then | |
| 23 cp trim-trimmed.fastq ${X_3} | |
| 24 fi |