Mercurial > repos > mingchen0919 > aurora_star_site

annotate 01_index_genome.Rmd @ 1:c8c0b708c221 draft

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author mingchen0919
date Tue, 01 May 2018 11:07:53 -0400
parents c12e291895ff
children c04ef267c2c9
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1 ---
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2 title: 'Index genome'
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3 output:
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4 html_document:
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5 highlight: pygments
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6 ---
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8 ```{r setup, include=FALSE, warning=FALSE, message=FALSE}
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9 knitr::opts_chunk$set(error = TRUE, echo = FALSE)
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10 ```
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12 ## Job scripts
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14 ```{bash, echo=FALSE}
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15 sh ${TOOL_INSTALL_DIR}/build-and-run-job-scripts.sh
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16 ```
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17
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18 ### Index genome
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20 ```{r echo=FALSE,results='asis'}
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21 # display content of the job-script.sh file.
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22 cat('```bash\n')
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23 cat(readLines(paste0(Sys.getenv('REPORT_FILES_PATH'), '/index-genome.sh')), sep = '\n')
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24 cat('\n```')
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25 ```