Mercurial > repos > mingchen0919 > aurora_star_site
comparison 01_index_genome.Rmd @ 0:c12e291895ff draft
planemo upload commit 104ae24ee30761a0099eeb91362ed1e3e13aba4b
| author | mingchen0919 |
|---|---|
| date | Tue, 01 May 2018 10:45:22 -0400 |
| parents | |
| children | c04ef267c2c9 |
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| -1:000000000000 | 0:c12e291895ff |
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| 1 --- | |
| 2 title: 'Index genome' | |
| 3 output: | |
| 4 html_document: | |
| 5 highlight: pygments | |
| 6 --- | |
| 7 | |
| 8 ```{r setup, include=FALSE, warning=FALSE, message=FALSE} | |
| 9 knitr::opts_chunk$set(error = TRUE, echo = FALSE) | |
| 10 ``` | |
| 11 | |
| 12 ## Job scripts | |
| 13 | |
| 14 ```{bash, echo=FALSE} | |
| 15 sh ${TOOL_INSTALL_DIR}/build-and-run-job-scripts.sh | |
| 16 ``` | |
| 17 | |
| 18 ### Index genome | |
| 19 | |
| 20 ```{r echo=FALSE,results='asis'} | |
| 21 # display content of the job-script.sh file. | |
| 22 cat('```bash\n') | |
| 23 cat(readLines(paste0(Sys.getenv('REPORT_FILES_PATH'), '/index-genome.sh')), sep = '\n') | |
| 24 cat('\n```') | |
| 25 ``` |