Mercurial > repos > mingchen0919 > aurora_star_site

comparison 04_mapping_evaluation.Rmd @ 0:c12e291895ff draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 104ae24ee30761a0099eeb91362ed1e3e13aba4b
author mingchen0919
date Tue, 01 May 2018 10:45:22 -0400
parents
children c04ef267c2c9
comparison
equal deleted inserted replaced
-1:000000000000 0:c12e291895ff
1 ---
2 title: 'Mapping evaluation'
3 output:
4 html_document:
5 highlight: pygments
6 ---
7
8 ```{r setup, include=FALSE, warning=FALSE, message=FALSE}
9 knitr::opts_chunk$set(error = TRUE, echo = FALSE)
10 ```
11
12 ### Mapping evaluation
13
14 ```{r echo=FALSE,warning=FALSE,results='asis'}
15 # display content of the job-script.sh file.
16 cat('```bash\n')
17 cat(readLines(paste0(Sys.getenv('REPORT_FILES_PATH'), '/flagstat.sh')), sep = '\n')
18 cat('\n```')
19 ```
20
21
22 ### Mapping evaluation results
23
24 ```{r echo=FALSE,warning=FALSE,results='asis'}
25 # display content of the job-script.sh file.
26 cat('```bash\n')
27 cat(readLines(paste0(Sys.getenv('REPORT_FILES_PATH'), '/flagstat.txt')), sep = '\n')
28 cat('\n```')
29 ```