Mercurial > repos > mingchen0919 > aurora_star_site

comparison rmarkdown_report.xml @ 1:c8c0b708c221 draft

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planemo upload commit 104ae24ee30761a0099eeb91362ed1e3e13aba4b-dirty
author mingchen0919
date Tue, 01 May 2018 11:07:53 -0400
parents c12e291895ff
children 804fe260ee6c
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0:c12e291895ff 1:c8c0b708c221
1 <tool name="aurora_star_site" id='aurora_star_site_report' version="2.0.1"> 1 <tool name="aurora_star_site" id='aurora_star_site_report' version="2.0.1">
2 <description> 2 <description>
3 some description 3 ultrafast universal RNA-seq aligner
4 </description> 4 </description>
5 <requirements> 5 <requirements>
6 <requirement type="package" version="1.15.0.6-0">pandoc</requirement> 6 <requirement type="package" version="1.15.0.6-0">pandoc</requirement>
7 <requirement type="package" version="1.20.0">r-getopt</requirement> 7 <requirement type="package" version="1.20.0">r-getopt</requirement>
8 <requirement type="package" version="1.6">r-rmarkdown</requirement> 8 <requirement type="package" version="1.6">r-rmarkdown</requirement>
37 -F '$first_reads' 37 -F '$first_reads'
38 -R '$second_reads' 38 -R '$second_reads'
39 -S '$sorted_bam' 39 -S '$sorted_bam'
40 40
41 ]]></command> 41 ]]></command>
42 <inputs>
43 <inputs> 42 <inputs>
44 <param type="data" name="first_reads" label="First reads" optional="False" format="fastq,fastqsanger"/> 43 <param type="data" name="first_reads" label="First reads" optional="False" format="fastq,fastqsanger"/>
45 <param type="data" name="second_reads" label="Second reads" optional="True" format="fastq,fastqsanger"/> 44 <param type="data" name="second_reads" label="Second reads" optional="True" format="fastq,fastqsanger"/>
46 <param type="data" name="genomeFastaFiles" argument="--genomeFastaFiles" label="Genome fasta files" 45 <param type="data" name="genomeFastaFiles" argument="--genomeFastaFiles" label="Genome fasta files"
47 optional="False" format="fasta,fa"/> 46 optional="False" format="fasta,fa"/>