Mercurial > repos > mingchen0919 > package_bioconductor_edger_3_16_1

diff tool_dependencies.xml @ 0:45f676a74280 draft default tip

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author mingchen0919
date Thu, 27 Oct 2016 16:31:05 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Oct 27 16:31:05 2016 -0400
@@ -0,0 +1,29 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="R" version="3.2.1">
+        <repository changeset_revision="d9f7d84125b7" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="bioconductor-edger" version="3.16.1">
+        <install version="1.0">
+            <actions>
+                <action type="setup_r_environment">
+                    <repository changeset_revision="d9f7d84125b7" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="R" version="3.2.1" />
+                    </repository>
+                    <package sha256sum="ce9bc3506b702c6622bc67432a6424311846e6114ff3cf88e3aa7a7bd6b91c35">
+                        https://github.com/MingChen0919/galaxy-tool-dependencies-source-code/raw/master/limma_3.30.0.tar.gz
+                    </package>
+                    <package sha256sum="082005525214b87027b07c7a283d886a696969c85f2a09850075848b2787d0e4">
+                        https://github.com/MingChen0919/galaxy-tool-dependencies-source-code/raw/master/edgeR_3.16.1.tar.gz
+                    </package>
+                    <package sha256sum="f524148fdb29aac3a178618f88718d3d4ac91283014091aa11a01f1c70cd4e51">
+                        https://cran.rstudio.com/src/contrib/locfit_1.5-9.1.tar.gz
+                    </package>
+                </action>
+            </actions>
+        </install>
+        <readme>
+Differential expression analysis of RNASeq data.
+        </readme>
+    </package>
+</tool_dependency>