Mercurial > repos > mingchen0919 > rmarkdown_collection_builder

comparison collection_list.Rmd @ 4:63e9500cdeec draft

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planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_collection_builder commit 436d91722b309f61890d13d7ed28cd43c79a5c74
author mingchen0919
date Mon, 25 Sep 2017 16:41:49 -0400
parents cb6efa0f0cb6
children a0c8b2b25774
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3:cb6efa0f0cb6 4:63e9500cdeec
18 18
19 ```{r 'command line arguments'} 19 ```{r 'command line arguments'}
20 str(opt) 20 str(opt)
21 ``` 21 ```
22 22
23 # Rename files
23 24
24 ```{r 'rename files'} 25 ```{r 'rename files'}
25 # create directory 26 # create directory
26 dir.create('./files_directory') 27 dir.create('./files_directory')
27 # get full paths of original files 28 # get full paths of original files
35 # rename files 36 # rename files
36 file.copy(paste0('./files_directory/', original_files), 37 file.copy(paste0('./files_directory/', original_files),
37 paste0('./files_directory/', new_files)) 38 paste0('./files_directory/', new_files))
38 ``` 39 ```
39 40
40 # End
41
42 ```{r 'test'}
43 ls()
44 ```
45