Mercurial > repos > mingchen0919 > rmarkdown_collection_builder
comparison collection_list.Rmd @ 0:78018b735124 draft
planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_collection_builder commit ec13349788ea42e106b5ba3fc1a5095ed755e644-dirty
| author | mingchen0919 |
|---|---|
| date | Mon, 25 Sep 2017 14:28:52 -0400 |
| parents | |
| children | 6be61cb4a1d5 |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:78018b735124 |
|---|---|
| 1 --- | |
| 2 title: 'Collection builder (collection type: list)' | |
| 3 output: | |
| 4 html_document: | |
| 5 number_sections: true | |
| 6 toc: true | |
| 7 theme: cosmo | |
| 8 highlight: tango | |
| 9 --- | |
| 10 | |
| 11 ```{r setup, include=FALSE, warning=FALSE, message=FALSE} | |
| 12 knitr::opts_chunk$set( | |
| 13 echo = ECHO | |
| 14 ) | |
| 15 ``` | |
| 16 | |
| 17 ```{r} | |
| 18 str(opt) | |
| 19 ``` | |
| 20 | |
| 21 | |
| 22 ```{bash 'copy data to working directory', echo=FALSE} | |
| 23 mkdir files_directory | |
| 24 # Copy uploaded data to the working directory | |
| 25 for f in $(echo FILE_LIST | sed "s/,/ /g") | |
| 26 do | |
| 27 cp $f ./files_directory | |
| 28 done | |
| 29 ``` |