Mercurial > repos > mingchen0919 > rmarkdown_collection_builder

comparison collection_list_paired.Rmd @ 8:f555686ca340 draft default tip

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planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_collection_builder commit 88ca36a41aa577ba888cee39cf81b176bf7e68db-dirty
author mingchen0919
date Tue, 26 Sep 2017 16:22:18 -0400
parents a0c8b2b25774
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7:abf9cbd7578f 8:f555686ca340
38 # copy files to forward_files_directory. 38 # copy files to forward_files_directory.
39 file.copy(from_files, './forward_files_directory') 39 file.copy(from_files, './forward_files_directory')
40 # get original file names 40 # get original file names
41 original_files = list.files('./forward_files_directory') 41 original_files = list.files('./forward_files_directory')
42 # create new files names from original file names 42 # create new files names from original file names
43 new_files = gsub('\\.dat', '_forward\\.FORMAT', original_files)
44 new_files = paste0('input', 1:length(original_files), '_forward.FORMAT') 43 new_files = paste0('input', 1:length(original_files), '_forward.FORMAT')
45 new_files
46 # rename files 44 # rename files
47 file.copy(paste0('./forward_files_directory/', original_files), 45 file.copy(paste0('./forward_files_directory/', original_files),
48 paste0('./files_directory/', new_files)) 46 paste0('./files_directory/', new_files))
49 ``` 47 ```
50 48
58 # copy files to reverse_files_directory. 56 # copy files to reverse_files_directory.
59 file.copy(from_files, './reverse_files_directory') 57 file.copy(from_files, './reverse_files_directory')
60 # get original file names 58 # get original file names
61 original_files = list.files('./reverse_files_directory') 59 original_files = list.files('./reverse_files_directory')
62 # create new files names from original file names 60 # create new files names from original file names
63 new_files = gsub('\\.dat', '_reverse\\.FORMAT', original_files)
64 new_files = paste0('input', 1:length(original_files), '_reverse.FORMAT') 61 new_files = paste0('input', 1:length(original_files), '_reverse.FORMAT')
65 new_files
66 # rename files 62 # rename files
67 file.copy(paste0('./reverse_files_directory/', original_files), 63 file.copy(paste0('./reverse_files_directory/', original_files),
68 paste0('./files_directory/', new_files)) 64 paste0('./files_directory/', new_files))
69 ``` 65 ```