Mercurial > repos > mingchen0919 > rmarkdown_collection_builder
view collection_list.Rmd @ 0:78018b735124 draft
planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_collection_builder commit ec13349788ea42e106b5ba3fc1a5095ed755e644-dirty
author | mingchen0919 |
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date | Mon, 25 Sep 2017 14:28:52 -0400 |
parents | |
children | 6be61cb4a1d5 |
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--- title: 'Collection builder (collection type: list)' output: html_document: number_sections: true toc: true theme: cosmo highlight: tango --- ```{r setup, include=FALSE, warning=FALSE, message=FALSE} knitr::opts_chunk$set( echo = ECHO ) ``` ```{r} str(opt) ``` ```{bash 'copy data to working directory', echo=FALSE} mkdir files_directory # Copy uploaded data to the working directory for f in $(echo FILE_LIST | sed "s/,/ /g") do cp $f ./files_directory done ```