Mercurial > repos > mingchen0919 > rmarkdown_collection_builder
view collection_paired.Rmd @ 7:abf9cbd7578f draft
planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_collection_builder commit 88ca36a41aa577ba888cee39cf81b176bf7e68db-dirty
author | mingchen0919 |
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date | Tue, 26 Sep 2017 13:43:32 -0400 |
parents | a0c8b2b25774 |
children | f555686ca340 |
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--- title: 'Build collection: a paired datasets' output: html_document: number_sections: true toc: true theme: cosmo highlight: tango --- ```{r setup, include=FALSE, warning=FALSE, message=FALSE} knitr::opts_chunk$set( echo = ECHO ) ``` # Command line arguments ```{r 'command line arguments'} str(opt) ``` # Rename files ```{r} file.copy("FORWARD_INPUT", './forward.FORMAT') file.copy("REVERSE_INPUT", './reverse.FORMAT') ```