Mercurial > repos > mingchen0919 > rmarkdown_deseq2

comparison DESeq.xml @ 3:15a5fb1a2ac8 draft

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planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_deseq2 commit 9285c2b8ad41a486dde2a87600a6b8267841c8b5-dirty
author mingchen0919
date Tue, 08 Aug 2017 11:45:42 -0400
parents 7231d7e8d3ed
children 7f0281d26b81
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2:a0d37b034e45 3:15a5fb1a2ac8
75 </inputs> 75 </inputs>
76 <outputs> 76 <outputs>
77 <data name="DESeq" format="html" label="DESeq Analysis" /> 77 <data name="DESeq" format="html" label="DESeq Analysis" />
78 <data name="deseq_workspace" format="rdata" label="R workspace: DESeq analysis" /> 78 <data name="deseq_workspace" format="rdata" label="R workspace: DESeq analysis" />
79 </outputs> 79 </outputs>
80 <citations>
81 <citation>
82 @article{love2014moderated,
83 title={Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2},
84 author={Love, Michael I and Huber, Wolfgang and Anders, Simon},
85 journal={Genome biology},
86 volume={15},
87 number={12},
88 pages={550},
89 year={2014},
90 publisher={BioMed Central}
91 }
92 </citation>
93 <citation type="bibtex">
94 @article{allaire2016rmarkdown,
95 title={rmarkdown: Dynamic Documents for R, 2016},
96 author={Allaire, J and Cheng, Joe and Xie, Yihui and McPherson, Jonathan and Chang, Winston and Allen, Jeff and Wickham, Hadley and Atkins, Aron and Hyndman, Rob},
97 journal={R package version 0.9},
98 volume={6},
99 year={2016}
100 }
101 </citation>
102 <citation type="bibtex">
103 @book{xie2015dynamic,
104 title={Dynamic Documents with R and knitr},
105 author={Xie, Yihui},
106 volume={29},
107 year={2015},
108 publisher={CRC Press}
109 }
110 </citation>
111 <citation>
112 @misc{pheatmap2015,
113 title = {pheatmap: Pretty Heatmaps},
114 author = {Raivo Kolde},
115 year = {2015},
116 note = {R package version 1.0.8},
117 url = {https://CRAN.R-project.org/package=pheatmap},
118 }
119 </citation>
120 <citation>
121 @misc{dt2016,
122 title = {DT: A Wrapper of the JavaScript Library 'DataTables'},
123 author = {Yihui Xie},
124 year = {2016},
125 note = {R package version 0.2},
126 url = {https://CRAN.R-project.org/package=DT},
127 }
128 </citation>
129 </citations>
80 </tool> 130 </tool>