Mercurial > repos > mingchen0919 > rmarkdown_deseq2

comparison DESeq_results.xml @ 3:15a5fb1a2ac8 draft

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planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_deseq2 commit 9285c2b8ad41a486dde2a87600a6b8267841c8b5-dirty
author mingchen0919
date Tue, 08 Aug 2017 11:45:42 -0400
parents 7231d7e8d3ed
children 7f0281d26b81
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2:a0d37b034e45 3:15a5fb1a2ac8
83 <param type="boolean" name="echo" truevalue="TRUE" falsevalue="FALSE" checked="false" label="Display analysis code in report?" /> 83 <param type="boolean" name="echo" truevalue="TRUE" falsevalue="FALSE" checked="false" label="Display analysis code in report?" />
84 </inputs> 84 </inputs>
85 <outputs> 85 <outputs>
86 <data name="deseq_results" format="html" label="DESeq Results" /> 86 <data name="deseq_results" format="html" label="DESeq Results" />
87 </outputs> 87 </outputs>
88 <citations>
89 <citation>
90 @article{love2014moderated,
91 title={Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2},
92 author={Love, Michael I and Huber, Wolfgang and Anders, Simon},
93 journal={Genome biology},
94 volume={15},
95 number={12},
96 pages={550},
97 year={2014},
98 publisher={BioMed Central}
99 }
100 </citation>
101 <citation type="bibtex">
102 @article{allaire2016rmarkdown,
103 title={rmarkdown: Dynamic Documents for R, 2016},
104 author={Allaire, J and Cheng, Joe and Xie, Yihui and McPherson, Jonathan and Chang, Winston and Allen, Jeff and Wickham, Hadley and Atkins, Aron and Hyndman, Rob},
105 journal={R package version 0.9},
106 volume={6},
107 year={2016}
108 }
109 </citation>
110 <citation type="bibtex">
111 @book{xie2015dynamic,
112 title={Dynamic Documents with R and knitr},
113 author={Xie, Yihui},
114 volume={29},
115 year={2015},
116 publisher={CRC Press}
117 }
118 </citation>
119 <citation>
120 @misc{pheatmap2015,
121 title = {pheatmap: Pretty Heatmaps},
122 author = {Raivo Kolde},
123 year = {2015},
124 note = {R package version 1.0.8},
125 url = {https://CRAN.R-project.org/package=pheatmap},
126 }
127 </citation>
128 <citation>
129 @misc{dt2016,
130 title = {DT: A Wrapper of the JavaScript Library 'DataTables'},
131 author = {Yihui Xie},
132 year = {2016},
133 note = {R package version 0.2},
134 url = {https://CRAN.R-project.org/package=DT},
135 }
136 </citation>
137 </citations>
88 </tool> 138 </tool>