Mercurial > repos > mingchen0919 > rmarkdown_deseq2

comparison DESeq_visualization.xml @ 3:15a5fb1a2ac8 draft

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planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_deseq2 commit 9285c2b8ad41a486dde2a87600a6b8267841c8b5-dirty
author mingchen0919
date Tue, 08 Aug 2017 11:45:42 -0400
parents 7231d7e8d3ed
children 7f0281d26b81
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2:a0d37b034e45 3:15a5fb1a2ac8
89 <param type="boolean" name="echo" truevalue="TRUE" falsevalue="FALSE" checked="false" label="Display analysis code in report?" /> 89 <param type="boolean" name="echo" truevalue="TRUE" falsevalue="FALSE" checked="false" label="Display analysis code in report?" />
90 </inputs> 90 </inputs>
91 <outputs> 91 <outputs>
92 <data name="deseq_visualization" format="html" label="DESeq Visualization" /> 92 <data name="deseq_visualization" format="html" label="DESeq Visualization" />
93 </outputs> 93 </outputs>
94 <citations>
95 <citation>
96 @article{love2014moderated,
97 title={Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2},
98 author={Love, Michael I and Huber, Wolfgang and Anders, Simon},
99 journal={Genome biology},
100 volume={15},
101 number={12},
102 pages={550},
103 year={2014},
104 publisher={BioMed Central}
105 }
106 </citation>
107 <citation type="bibtex">
108 @article{allaire2016rmarkdown,
109 title={rmarkdown: Dynamic Documents for R, 2016},
110 author={Allaire, J and Cheng, Joe and Xie, Yihui and McPherson, Jonathan and Chang, Winston and Allen, Jeff and Wickham, Hadley and Atkins, Aron and Hyndman, Rob},
111 journal={R package version 0.9},
112 volume={6},
113 year={2016}
114 }
115 </citation>
116 <citation type="bibtex">
117 @book{xie2015dynamic,
118 title={Dynamic Documents with R and knitr},
119 author={Xie, Yihui},
120 volume={29},
121 year={2015},
122 publisher={CRC Press}
123 }
124 </citation>
125 <citation>
126 @misc{pheatmap2015,
127 title = {pheatmap: Pretty Heatmaps},
128 author = {Raivo Kolde},
129 year = {2015},
130 note = {R package version 1.0.8},
131 url = {https://CRAN.R-project.org/package=pheatmap},
132 }
133 </citation>
134 <citation>
135 @misc{dt2016,
136 title = {DT: A Wrapper of the JavaScript Library 'DataTables'},
137 author = {Yihui Xie},
138 year = {2016},
139 note = {R package version 0.2},
140 url = {https://CRAN.R-project.org/package=DT},
141 }
142 </citation>
143 </citations>
94 </tool> 144 </tool>