Mercurial > repos > mingchen0919 > rmarkdown_deseq2
comparison DESeq.xml @ 9:924d122d0027 draft default tip
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| author | mingchen0919 |
|---|---|
| date | Thu, 16 Nov 2017 10:16:29 -0500 |
| parents | 5f7665898fd9 |
| children |
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| 8:5f7665898fd9 | 9:924d122d0027 |
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| 61 ]]> | 61 ]]> |
| 62 </command> | 62 </command> |
| 63 <inputs> | 63 <inputs> |
| 64 <param type="boolean" name="echo" truevalue="TRUE" falsevalue="FALSE" checked="false" | 64 <param type="boolean" name="echo" truevalue="TRUE" falsevalue="FALSE" checked="false" |
| 65 label="Display analysis code in report?"/> | 65 label="Display analysis code in report?"/> |
| 66 <param type="data" name="count_files" format="tabular" multiple="true" label="Count files from htseq-count"/> | 66 <param type="data" name="count_files" format="txt" multiple="true" label="Count files from htseq-count"/> |
| 67 <param type="data" name="sample_table" format="tabular" multiple="false" label="sample table file" | 67 <param type="data" name="sample_table" format="txt" multiple="false" label="sample table file" |
| 68 help="The sample table file contains a table. The first column is the sample name, the second column is | 68 help="The sample table file contains a table. The first column is the sample name, the second column is |
| 69 the count file name and the rest of columns are treatment columns. The file names in this table have | 69 the count file name and the rest of columns are treatment columns. The file names in this table have |
| 70 to be in the same order as the count files uploaded in the previous step. "/> | 70 to be in the same order as the count files uploaded in the previous step. "/> |
| 71 <param type="text" name="design_formula" value="~ condition_1 + condition_2" label="Design formula" | 71 <param type="text" name="design_formula" value="~ condition_1 + condition_2" label="Design formula" |
| 72 help="The simplest design formula for differential expression would be ~ condition, where condition | 72 help="The simplest design formula for differential expression would be ~ condition, where condition |