Mercurial > repos > mingchen0919 > rmarkdown_fastqc_site
comparison index.Rmd @ 7:d820be692d74 draft
planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_fastqc_site commit d91f269e8bc09a488ed2e005122bbb4a521f44a0-dirty
| author | mingchen0919 |
|---|---|
| date | Tue, 08 Aug 2017 12:36:13 -0400 |
| parents | d732d4526c6d |
| children | 507eec497730 |
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| 6:2f4df2be0572 | 7:d820be692d74 |
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| 1 --- | |
| 2 title: "FastQC Report" | |
| 3 output: html_document | |
| 4 --- | |
| 5 | |
| 6 ```{r setup, include=FALSE, warning=FALSE, message=FALSE} | |
| 7 knitr::opts_chunk$set(echo = TRUE) | |
| 8 ``` | |
| 9 | |
| 10 | |
| 11 | |
| 12 ## References | |
| 13 | |
| 14 * Andrews, Simon. "FastQC: a quality control tool for high throughput sequence data." (2010): 175-176. | |
| 15 * Goecks, Jeremy, Anton Nekrutenko, and James Taylor. "Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences." Genome biology 11.8 (2010): R86. | |
| 16 * Afgan, Enis, et al. "The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update." Nucleic acids research (2016): gkw343. | |
| 17 * Highcharts. https://www.highcharts.com/. (access by May 26, 2017). | |
| 18 * R Core Team (2017). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/. | |
| 19 * Joshua Kunst (2017). highcharter: A Wrapper for the 'Highcharts' Library. R package version 0.5.0. https://CRAN.R-project.org/package=highcharter | |
| 20 * Carson Sievert, Chris Parmer, Toby Hocking, Scott Chamberlain, Karthik Ram, Marianne Corvellec and Pedro Despouy (2017). plotly: Create Interactive Web Graphics via 'plotly.js'. R package version 4.6.0. https://CRAN.R-project.org/package=plotly |