Mercurial > repos > mingchen0919 > rmarkdown_fastqc_site
diff index.Rmd @ 0:d732d4526c6d draft
planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_fastqc_site commit ddb1f6aca7619aea2e660b1729367841b56ba4c9-dirty
author | mingchen0919 |
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date | Tue, 08 Aug 2017 10:14:46 -0400 |
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children | 507eec497730 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/index.Rmd Tue Aug 08 10:14:46 2017 -0400 @@ -0,0 +1,20 @@ +--- +title: "FastQC Report" +output: html_document +--- + +```{r setup, include=FALSE, warning=FALSE, message=FALSE} +knitr::opts_chunk$set(echo = TRUE) +``` + + + +## References + +* Andrews, Simon. "FastQC: a quality control tool for high throughput sequence data." (2010): 175-176. +* Goecks, Jeremy, Anton Nekrutenko, and James Taylor. "Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences." Genome biology 11.8 (2010): R86. +* Afgan, Enis, et al. "The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update." Nucleic acids research (2016): gkw343. +* Highcharts. https://www.highcharts.com/. (access by May 26, 2017). +* R Core Team (2017). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/. +* Joshua Kunst (2017). highcharter: A Wrapper for the 'Highcharts' Library. R package version 0.5.0. https://CRAN.R-project.org/package=highcharter +* Carson Sievert, Chris Parmer, Toby Hocking, Scott Chamberlain, Karthik Ram, Marianne Corvellec and Pedro Despouy (2017). plotly: Create Interactive Web Graphics via 'plotly.js'. R package version 4.6.0. https://CRAN.R-project.org/package=plotly