Mercurial > repos > mingchen0919 > rmarkdown_feature_counts
comparison rmarkdown_feature_counts.xml @ 3:40704501d8c4 draft default tip
update
| author | mingchen0919 |
|---|---|
| date | Fri, 29 Dec 2017 22:17:46 -0500 |
| parents | 8519371cc6d1 |
| children |
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| 2:8519371cc6d1 | 3:40704501d8c4 |
|---|---|
| 170 <param type="boolean" name="report_reads" label="reportReads" | 170 <param type="boolean" name="report_reads" label="reportReads" |
| 171 help="logical indicating if read counting result for each read/fragment is saved to a file. If TRUE, read counting results for reads/fragments will be saved to a tab-delimited file that contains four columns including name of read/fragment, status(assigned or the reason if not assigned), name of target feature/meta-feature and number of hits if the read/fragment is counted multiple times. Name of the file is the same as name of the input read file except a suffix '.featureCounts' is added. Multiple files will be generated if there is more than one input read file." | 171 help="logical indicating if read counting result for each read/fragment is saved to a file. If TRUE, read counting results for reads/fragments will be saved to a tab-delimited file that contains four columns including name of read/fragment, status(assigned or the reason if not assigned), name of target feature/meta-feature and number of hits if the read/fragment is counted multiple times. Name of the file is the same as name of the input read file except a suffix '.featureCounts' is added. Multiple files will be generated if there is more than one input read file." |
| 172 optional="False" checked="False" truevalue="TRUE" falsevalue="FALSE"/> | 172 optional="False" checked="False" truevalue="TRUE" falsevalue="FALSE"/> |
| 173 </inputs> | 173 </inputs> |
| 174 <outputs> | 174 <outputs> |
| 175 <data name="report" format="html" label="tool name report" hidden="false"/> | 175 <data name="report" format="html" label="feature counts report" hidden="false"/> |
| 176 <data name="sink_message" format="txt" label="Warnings and Errors" from_work_dir="warnings_and_errors.txt" | 176 <data name="sink_message" format="txt" label="Warnings and Errors" from_work_dir="warnings_and_errors.txt" |
| 177 hidden="false"/> | 177 hidden="false"/> |
| 178 <data name="feature_counts" format="rdata" label="feature counts" from_work_dir="feature_counts.RData" | 178 <data name="feature_counts" format="rdata" label="feature counts" from_work_dir="feature_counts.RData" |
| 179 hidden="false"/> | 179 hidden="false"/> |
| 180 <data name="feature_counts_csv" format="tabular" label="feature counts (.txt)" | 180 <data name="feature_counts_csv" format="tabular" label="feature counts (.txt)" |