Mercurial > repos > mingchen0919 > rmarkdown_feature_counts

diff rmarkdown_feature_counts.xml @ 2:8519371cc6d1 draft

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update
author mingchen0919
date Fri, 29 Dec 2017 22:05:45 -0500
parents 5af86972b408
children 40704501d8c4
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line diff
--- a/rmarkdown_feature_counts.xml	Fri Dec 29 20:12:30 2017 -0500
+++ b/rmarkdown_feature_counts.xml	Fri Dec 29 22:05:45 2017 -0500
@@ -77,8 +77,8 @@
                optional="False" value="mm10"/>
         <param type="data" name="annot_ext" label="External annotation (GTF)"
                help="A character string giving name of a user-provided annotation file or a data frame including user-provided annotation data"
-               optional="False" format="gtf,saf" multiple="False"/>
-        <param type="boolean" name="isGTFAnnotationFile" optional="False" checked="False" truevalue="TRUE"
+               optional="False" format="gtf,gff,saf" multiple="False"/>
+        <param type="boolean" name="isGTFAnnotationFile" optional="False" checked="True" truevalue="TRUE"
                falsevalue="FALSE"/>
         <param type="text" name="gtf_feature_type" label="GTF.featureType"
                help="a character string giving the feature type used to select rows in the GTF annotation which will be used for read summarization. exon by default. This argument is only applicable when isGTFAnnotationFile is TRUE"