Mercurial > repos > mingchen0919 > rmarkdown_samtools_flagstat

changeset 4:1723d63c7d95 draft

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update
author mingchen0919
date Fri, 29 Dec 2017 21:22:21 -0500
parents 8354d118baab
children 2a244f3c48a9
files rmarkdown_samtools_flagstat.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/rmarkdown_samtools_flagstat.xml	Wed Dec 27 23:29:32 2017 -0500
+++ b/rmarkdown_samtools_flagstat.xml	Fri Dec 29 21:22:21 2017 -0500
@@ -13,8 +13,8 @@
   </stdio>
   <command><![CDATA[                    Rscript '${__tool_directory__}/rmarkdown_samtools_flagstat_render.R'
                         -e $echo
-                        -b $input_bam
-                        -n $input_bam.name
+                        -b '$input_bam'
+                        -n '$input_bam.name'
                         -r $report
                         -d $report.files_path
                         -s $sink_message