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comparison wgcna_preprocessing.xml @ 4:a41eb67bce4c draft

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planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_wgcna commit d9ab791a7ce12362dc6e28c0a518a3f23dd581fe-dirty
author mingchen0919
date Tue, 17 Oct 2017 19:14:03 -0400
parents 240af4b07b92
children a1a34771304e
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3:240af4b07b92 4:a41eb67bce4c
1 <tool id="wgcna_preprocessing" name="WGCNA: preprocessing" version="1.0.0"> 1 <tool id="wgcna_preprocessing" name="WGCNA: preprocessing" version="1.0.1">
2 <requirements> 2 <requirements>
3 <requirement type="package" version="1.15.0.6-0">pandoc</requirement> 3 <requirement type="package" version="1.15.0.6-0">pandoc</requirement>
4 <requirement type="package" version="1.20.0">r-getopt</requirement> 4 <requirement type="package" version="1.20.0">r-getopt</requirement>
5 <requirement type="package" version="1.2">r-rmarkdown</requirement> 5 <requirement type="package" version="1.3">r-rmarkdown</requirement>
6 <requirement type="package" version="1.8.4">r-plyr</requirement> 6 <requirement type="package" version="1.8.4">r-plyr</requirement>
7 <requirement type="package" version="0.4.0">r-highcharter</requirement> 7 <requirement type="package" version="0.4.0">r-highcharter</requirement>
8 <requirement type="package" version="0.2">r-dt</requirement> 8 <requirement type="package" version="0.2">r-dt</requirement>
9 <requirement type="package" version="0.3.5">r-htmltools</requirement> 9 <requirement type="package" version="0.3.5">r-htmltools</requirement>
10 <requirement type="package" version="1.51">r-wgcna</requirement> 10 <requirement type="package" version="1.51">r-wgcna</requirement>
53 ]]> 53 ]]>
54 </command> 54 </command>
55 <inputs> 55 <inputs>
56 <param type="data" name="expression_data" format="csv" optional="false" label="Gene expression data" 56 <param type="data" name="expression_data" format="csv" optional="false" label="Gene expression data"
57 help="Each row represents a gene and each column represents a sample."/> 57 help="Each row represents a gene and each column represents a sample."/>
58
59 <param type="boolean" name="echo" truevalue="TRUE" falsevalue="FALSE" checked="false" label="Display analysis code in report?" /> 58 <param type="boolean" name="echo" truevalue="TRUE" falsevalue="FALSE" checked="false" label="Display analysis code in report?" />
60 </inputs> 59 </inputs>
61 <outputs> 60 <outputs>
62 <data name="wgcna_preprocessing" format="html" label="WGCNA: preprocessing" /> 61 <data name="wgcna_preprocessing" format="html" label="WGCNA: preprocessing" />
63 <data name="preprocessing_workspace" format="rdata" label="R workspace: WGCNA preprocessing" /> 62 <data name="preprocessing_workspace" format="rdata" label="R workspace: WGCNA preprocessing" />