Mercurial > repos > mingchen0919 > rmarkdown_wgcna

changeset 4:a41eb67bce4c draft

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planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_wgcna commit d9ab791a7ce12362dc6e28c0a518a3f23dd581fe-dirty
author mingchen0919
date Tue, 17 Oct 2017 19:14:03 -0400
parents 240af4b07b92
children a1a34771304e
files wgcna_construct_network.xml wgcna_eigengene_visualization.xml wgcna_preprocessing.xml
diffstat 3 files changed, 6 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/wgcna_construct_network.xml	Tue Aug 08 15:06:26 2017 -0400
+++ b/wgcna_construct_network.xml	Tue Oct 17 19:14:03 2017 -0400
@@ -1,8 +1,8 @@
-<tool id="wgcna_construct_network" name="WGCNA: construct network" version="1.0.0">
+<tool id="wgcna_construct_network" name="WGCNA: construct network" version="1.0.1">
     <requirements>
         <requirement type="package" version="1.15.0.6-0">pandoc</requirement>
         <requirement type="package" version="1.20.0">r-getopt</requirement>
-        <requirement type="package" version="1.2">r-rmarkdown</requirement>
+        <requirement type="package" version="1.3">r-rmarkdown</requirement>
         <requirement type="package" version="1.8.4">r-plyr</requirement>
         <requirement type="package" version="0.4.0">r-highcharter</requirement>
         <requirement type="package" version="0.2">r-dt</requirement>
--- a/wgcna_eigengene_visualization.xml	Tue Aug 08 15:06:26 2017 -0400
+++ b/wgcna_eigengene_visualization.xml	Tue Oct 17 19:14:03 2017 -0400
@@ -1,8 +1,8 @@
-<tool id="wgcna_eigengene_visualization" name="WGCNA: eigengene visualization" version="1.0.0">
+<tool id="wgcna_eigengene_visualization" name="WGCNA: eigengene visualization" version="1.0.1">
     <requirements>
         <requirement type="package" version="1.15.0.6-0">pandoc</requirement>
         <requirement type="package" version="1.20.0">r-getopt</requirement>
-        <requirement type="package" version="1.2">r-rmarkdown</requirement>
+        <requirement type="package" version="1.3">r-rmarkdown</requirement>
         <requirement type="package" version="1.8.4">r-plyr</requirement>
         <requirement type="package" version="0.4.0">r-highcharter</requirement>
         <requirement type="package" version="0.2">r-dt</requirement>
--- a/wgcna_preprocessing.xml	Tue Aug 08 15:06:26 2017 -0400
+++ b/wgcna_preprocessing.xml	Tue Oct 17 19:14:03 2017 -0400
@@ -1,8 +1,8 @@
-<tool id="wgcna_preprocessing" name="WGCNA: preprocessing" version="1.0.0">
+<tool id="wgcna_preprocessing" name="WGCNA: preprocessing" version="1.0.1">
     <requirements>
         <requirement type="package" version="1.15.0.6-0">pandoc</requirement>
         <requirement type="package" version="1.20.0">r-getopt</requirement>
-        <requirement type="package" version="1.2">r-rmarkdown</requirement>
+        <requirement type="package" version="1.3">r-rmarkdown</requirement>
         <requirement type="package" version="1.8.4">r-plyr</requirement>
         <requirement type="package" version="0.4.0">r-highcharter</requirement>
         <requirement type="package" version="0.2">r-dt</requirement>
@@ -55,7 +55,6 @@
     <inputs>
         <param type="data" name="expression_data" format="csv" optional="false" label="Gene expression data"
                help="Each row represents a gene and each column represents a sample."/>
-
         <param type="boolean" name="echo" truevalue="TRUE" falsevalue="FALSE" checked="false" label="Display analysis code in report?" />
     </inputs>
     <outputs>