Mercurial > repos > mini > strelka
diff macro_outputs.xml @ 22:1c8dcda28be7
version 27/11/2014, corrected extra arguments bug
| author | mini |
|---|---|
| date | Thu, 27 Nov 2014 10:31:58 +0100 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macro_outputs.xml Thu Nov 27 10:31:58 2014 +0100 @@ -0,0 +1,27 @@ +<macros> + <macro name="outputs"> + <outputs> + <data format="vcf" name="output1_vcf" label="${tool.name} on ${on_string}(passed.somatic.snvs.vcf)" from_work_dir="StrelkaAnalysis/results/passed.somatic.snvs.vcf"> + <filter>output1_file_check == True</filter> + </data> + <data format="vcf" name="output2_vcf" label="${tool.name} on ${on_string}(passed.somatic.indels.vcf)" from_work_dir="StrelkaAnalysis/results/passed.somatic.indels.vcf"> + <filter>output2_file_check == True</filter> + </data> + <data format="vcf" name="output3_vcf" label="${tool.name} on ${on_string}(all.somatic.snvs.vcf)" from_work_dir="StrelkaAnalysis/results/all.somatic.snvs.vcf"> + <filter>output3_file_check == True</filter> + </data> + <data format="vcf" name="output4_vcf" label="${tool.name} on ${on_string}(all.somatic.indels.vcf)" from_work_dir="StrelkaAnalysis/results/all.somatic.indels.vcf"> + <filter>output4_file_check == True</filter> + </data> + <data format="tabular" name="conf_file.ini" label="conf_file.ini" from_work_dir="StrelkaAnalysis/config.ini"> + <filter>conf_file_check == True</filter> + </data> + <data format="bam" name="output5_bam" label="${tool.name} on ${on_string}(normal.realigned.bam)" from_work_dir="StrelkaAnalysis/realigned/normal.realigned.bam"> + <filter>output5_file_check == True</filter> + </data> + <data format="bam" name="output6_bam" label="${tool.name} on ${on_string}(tumor.realigned.bam)" from_work_dir="StrelkaAnalysis/realigned/tumor.realigned.bam"> + <filter>output6_file_check == True</filter> + </data> + </outputs> + </macro> +</macros>