Mercurial > repos > mini > strelka

diff macro_tests.xml @ 22:1c8dcda28be7

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
version 27/11/2014, corrected extra arguments bug
author mini
date Thu, 27 Nov 2014 10:31:58 +0100
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macro_tests.xml	Thu Nov 27 10:31:58 2014 +0100
@@ -0,0 +1,16 @@
+<macros>
+  <macro name="tests">
+    <tests>
+      <test>
+        <param name="normalBam" ftype="bam" value="NA12891_dupmark_chr20_region.bam"/>
+        <param name="tumorBam" ftype="bam" value="NA12892_dupmark_chr20_region.bam"/>
+        <param name="refFile" ftype="fasta" value="chr20_860k_only.fa"/>
+        <param name="configuration_switch" value="Default"/>
+        <output name="output1_vcf" file="passed.somatic.snvs.vcf"/>
+        <output name="output2_vcf" file="passed.somatic.indels.vcf"/>
+        <output name="output3_vcf" file="all.somatic.snvs.vcf"/>
+        <output name="output4_vcf" file="all.somatic.indels.vcf"/>
+      </test>
+    </tests>
+  </macro>
+</macros>