Mercurial > repos > mini > strelka

diff strelka_wrapper.py @ 8:2cee4ed50058

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author mini
date Fri, 26 Sep 2014 14:33:07 +0200
parents 3e8541ece3c7
children 0e8e6011082b f66f23fcc83a
line wrap: on
line diff
--- a/strelka_wrapper.py	Fri Sep 26 14:30:27 2014 +0200
+++ b/strelka_wrapper.py	Fri Sep 26 14:33:07 2014 +0200
@@ -93,7 +93,7 @@
     parser.add_argument( '--scriptPath', help='path to tumor bam file', required = False )
     args = parser.parse_args()
 
-    root_dir= SCRIPT_PATH
+    root_dir= args.scriptPath
     expected_dir="for_tests"
     job_dir=os.getcwd()
     analysis_dir=job_dir + "/StrelkaAnalysis"