--- a/strelka_wrapper.py	Wed Oct 01 12:33:46 2014 +0200
+++ b/strelka_wrapper.py	Wed Oct 01 13:45:33 2014 +0200
@@ -58,6 +58,7 @@
 
 def __main__():
     #Manage options
+    print(os.environ['PATH'])
     parser = argparse.ArgumentParser()                                             
     parser.add_argument( '-t', '--tumorBam', help='path to tumor bam file', required = False )
     parser.add_argument( '-n', '--normalBam', help='path to tumor bam file', required = False )   
@@ -139,6 +140,10 @@
     print("**** workflow cmd: '" + cmd + "'")
     my_Popen( cmd, "workflow_stderr", tmp_dir, "Error during workflow execution !")   
     print("**** completed workflow execution")
+    
+    cmdbash="cp %s %s" % (config_ini, analysis_dir + "/config.ini")
+    my_Popen(cmdbash, "copy_final_conf_file_err", tmp_dir, "Error during the copy of conf file after job is done, quite strange...")  
+
 
 if __name__=='__main__':
     __main__()