# HG changeset patch
# User mini
# Date 1411734787 -7200
# Node ID 2cee4ed50058581fbaa9de9f5a69a09e622787d3
# Parent  3e8541ece3c76e9fb7af10682ef516edb0714593
nothing relevant

diff -r 3e8541ece3c7 -r 2cee4ed50058 strelka_wrapper.py
--- a/strelka_wrapper.py	Fri Sep 26 14:30:27 2014 +0200
+++ b/strelka_wrapper.py	Fri Sep 26 14:33:07 2014 +0200
@@ -93,7 +93,7 @@
     parser.add_argument( '--scriptPath', help='path to tumor bam file', required = False )
     args = parser.parse_args()
 
-    root_dir= SCRIPT_PATH
+    root_dir= args.scriptPath
     expected_dir="for_tests"
     job_dir=os.getcwd()
     analysis_dir=job_dir + "/StrelkaAnalysis"