# HG changeset patch
# User mini
# Date 1411660934 14400
# Node ID f48854499d41f09fb85b6e6bc793888f989d4968
# Parent  7a9f20ca4ad5e40b9b2b063551d68c1d0a895e2c
Deleted selected files

diff -r 7a9f20ca4ad5 -r f48854499d41 strelka2/strelka.xml
--- a/strelka2/strelka.xml	Thu Sep 25 11:59:08 2014 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,35 +0,0 @@
-<tool id="strelka2" name="Strelka 2" version="1.0.14">
-  <requirements>
-    <requirement type="package" version="0.1.18">samtools</requirement>
-    <requirement type="package" version="0.1.11">vcftools</requirement>
-  </requirements>
-  <description>Strelka without dependencie built-in</description>
-  <command interpreter="python">
-   strelka_wrapper.py
-    --tumorBam $tumorBam
-    --normalBam $normalBam
-    --refFile $refFile
-    --configFile $configFile
-  </command>
-
-  <inputs>
-    <param format="bam" name="tumorBam" type="data" label="Tumor bam file"/>
-    <param format="bam" name="normalBam" type="data" label="Normal bam file"/>
-    <param format="fasta" name="refFile" type="data" label="ref fasta file"/>
-    <param format="ini" name="configFile" type="data" label="config file"/>
-  </inputs>
-
-  <outputs>
-    <data format="vcf" name="output_vcf_1" label="${tool.name} on ${on_string} (passed.somatic.snvs.vcf)" from_work_dir="StrelkaAnalysis/results/passed.somatic.snvs.vcf" />
-    <data format="vcf" name="output_vcf_2" label="${tool.name} on ${on_string} (passed.somatic.indels.vcf)" from_work_dir="StrelkaAnalysis/results/passed.somatic.indels.vcf" />
-    <data format="vcf" name="output_vcf_3" label="${tool.name} on ${on_string} (all.somatic.snvs.vcf)" from_work_dir="StrelkaAnalysis/results/all.somatic.snvs.vcf"  />
-    <data format="vcf" name="output_vcf_4" label="${tool.name} on ${on_string} (all.somatic.indels.vcf)" from_work_dir="StrelkaAnalysis/results/all.somatic.indels.vcf"  />
-  </outputs>
-  <trackster_conf/>
-
-
-  <help>
-Strelka, a method for somatic SNV and small indel detectipon from sequencing data of matched tumor-normal samples.
-  </help>
-
-</tool>