# HG changeset patch
# User mkhan1980
# Date 1366903343 14400
# Node ID f1696b304b8d22ad06579129c115fa6f4ebd27a6
# Parent  1c09a4a564596a14db30307276285b09be1fe3f6
Uploaded

diff -r 1c09a4a56459 -r f1696b304b8d check2.pl
--- a/check2.pl	Thu Apr 25 11:20:08 2013 -0400
+++ b/check2.pl	Thu Apr 25 11:22:23 2013 -0400
@@ -106,7 +106,7 @@
 
 # Define the pattern for CTCF. Because of pseudocount, a wildcard is allowed at 
 #each position. 
-  	  		my $pattern = "[ATGC][ATGC][ATGC][ATGC][ATGC][ATGC][ATGC][ATGC][ATGC][ATGC][ATGC][ATGC][ATGC][ATGC][ATGC][ATGC][ATGC][ATGC][ATGC]";
+  	  		my $pattern = "[ATGCN][ATGCN][ATGCN][ATGCN][ATGCN][ATGCN][ATGCN][ATGCN][ATGCN][ATGCN][ATGCN][ATGCN][ATGCN][ATGCN][ATGCN][ATGCN][ATGCN][ATGCN][ATGCN]";
 	   
 # Compare the pattern with the 19 bp nucleotide segments.