Mercurial > repos > mmaiensc > ember

comparison GALAXY_FILES/tools/EMBER/Make_Logo.xml @ 0:003f802d4c7d

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author mmaiensc
date Wed, 29 Feb 2012 15:03:33 -0500
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-1:000000000000 0:003f802d4c7d
1 <tool id="make_logo" name="Make Logo" version="1.3">
2 <description>Makes a visual representation of the EMBER expression pattern</description>
3 <command interpreter="perl">Make_Logo_Galaxy.pl -m $model -c $compslist -o $output</command>
4 <inputs>
5 <param format="txt" name="model" type="data" label="Model file"/>
6 <param format="txt" name="compslist" type="data" label="Comparison list"/>
7 </inputs>
8 <outputs>
9 <data format="eps" name="output"/>
10 </outputs>
11
12 <tests>
13 <test>
14 <param name="model" value="EMBER/patterns-1.model"/>
15 <param name="compslist" value="EMBER/comparisons_list.txt"/>
16 <output name="output">
17 <assert_contents>
18 <has_text text="%%Title:" />
19 </assert_contents>
20 </output>
21 </test>
22 </tests>
23
24 <help>
25
26 This tool makes an eps file representing the expression pattern from EMBER.
27
28 -----
29
30 Description of inputs:
31
32 *Model file*: the .model output EMBER.
33
34 *Comparison list*: the same comparison list input to PreProcess Expression Data (used to make plot labels).
35
36 </help>
37
38 </tool>
39