Mercurial > repos > mmaiensc > ember
comparison GALAXY_FILES/tools/EMBER/Expression_Pattern_Distance.xml @ 3:037c3edda16e
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| author | mmaiensc |
|---|---|
| date | Thu, 22 Mar 2012 13:49:52 -0400 |
| parents | |
| children | e960969a92ae |
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| 2:1a84b8178b45 | 3:037c3edda16e |
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| 1 <tool id="expr_dist" name="Expression Pattern Distance" version="1.3.1"> | |
| 2 <description>Post-processing analysis: computes the distance between expression patterns from two EMBER runs</description> | |
| 3 <command interpreter="perl">Expression_Pattern_Distance.pl $model1 $model2 > $output</command> | |
| 4 <inputs> | |
| 5 <param format="txt" name="model1" type="data" label="Model file 1"/> | |
| 6 <param format="txt" name="model2" type="data" label="Model file 2"/> | |
| 7 </inputs> | |
| 8 <outputs> | |
| 9 <data format="txt" name="output"/> | |
| 10 </outputs> | |
| 11 | |
| 12 <tests> | |
| 13 <test> | |
| 14 <param name="model1" value="EMBER/patterns-1.model"/> | |
| 15 <param name="model2" value="EMBER/patterns-1.model"/> | |
| 16 <output name="output" file="EMBER/dist_1-1.txt"/> | |
| 17 </test> | |
| 18 </tests> | |
| 19 | |
| 20 <help> | |
| 21 | |
| 22 This tool calculates the distance (defined to be between 0 and 1) between two expression patterns from EMBER. | |
| 23 | |
| 24 ----- | |
| 25 | |
| 26 Description of inputs: | |
| 27 | |
| 28 *Model files 1 and 2*: the .model output EMBER (first line is "comparison/class; avg...") | |
| 29 | |
| 30 </help> | |
| 31 | |
| 32 </tool> | |
| 33 |