Mercurial > repos > mmaiensc > ember
comparison GALAXY_FILES/tools/EMBER/Make_Logo.xml @ 3:037c3edda16e
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| author | mmaiensc |
|---|---|
| date | Thu, 22 Mar 2012 13:49:52 -0400 |
| parents | |
| children | e960969a92ae |
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| 2:1a84b8178b45 | 3:037c3edda16e |
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| 1 <tool id="make_logo" name="Make Logo" version="1.3.1"> | |
| 2 <description>Post-processing analysis: makes a visual representation of the EMBER expression pattern</description> | |
| 3 <command interpreter="perl">Make_Logo_Galaxy.pl -m $model -c $compslist -o $output</command> | |
| 4 <inputs> | |
| 5 <param format="txt" name="model" type="data" label="Model file"/> | |
| 6 <param format="txt" name="compslist" type="data" label="Comparison list"/> | |
| 7 </inputs> | |
| 8 <outputs> | |
| 9 <data format="eps" name="output"/> | |
| 10 </outputs> | |
| 11 | |
| 12 <tests> | |
| 13 <test> | |
| 14 <param name="model" value="EMBER/patterns-1.model"/> | |
| 15 <param name="compslist" value="EMBER/comparisons_list.txt"/> | |
| 16 <output name="output"> | |
| 17 <assert_contents> | |
| 18 <has_text text="%%Title:" /> | |
| 19 </assert_contents> | |
| 20 </output> | |
| 21 </test> | |
| 22 </tests> | |
| 23 | |
| 24 <help> | |
| 25 | |
| 26 This tool makes an eps file representing the expression pattern from EMBER. | |
| 27 | |
| 28 ----- | |
| 29 | |
| 30 Description of inputs: | |
| 31 | |
| 32 *Model file*: the .model output EMBER (first line is "comparison/class; avg...") | |
| 33 | |
| 34 *Comparison list*: the same comparison list input to PreProcess Expression Data (used to make plot labels). | |
| 35 | |
| 36 NOTE: if you are running a local installation of Galaxy, you must have gnuplot installed to run Make Logo. Gnuplot is free and can be downloaded at http://www.gnuplot.info/. After downloading the package, follow the instructions in the INSTALL file. | |
| 37 | |
| 38 </help> | |
| 39 | |
| 40 </tool> | |
| 41 |